├── .gitignore ├── GOOD ├── __init__.py ├── data │ ├── __init__.py │ ├── dataset_manager.py │ ├── good_datasets │ │ ├── __init__.py │ │ ├── fiif_piif_motif.py │ │ ├── good_cmnist.py │ │ ├── good_hiv.py │ │ ├── good_motif.py │ │ ├── good_motif2.py │ │ ├── good_sst2.py │ │ ├── good_twitter.py │ │ └── lbap_core.py │ └── good_loaders │ │ ├── BaseLoader.py │ │ └── __init__.py ├── definitions.py ├── kernel │ ├── __init__.py │ ├── launch.py │ ├── launcher_manager.py │ ├── launchers │ │ ├── __init__.py │ │ ├── basic_launcher.py │ │ ├── harvest_launcher.py │ │ ├── multi_launcher.py │ │ └── single_launcher.py │ ├── main.py │ ├── pipeline_manager.py │ └── pipelines │ │ ├── __init__.py │ │ └── basic_pipeline.py ├── networks │ ├── __init__.py │ ├── model_manager.py │ └── models │ │ ├── ASAPGNNs.py │ │ ├── BaseGNN.py │ │ ├── CIGAGNNs.py │ │ ├── Classifiers.py │ │ ├── CoralNN.py │ │ ├── DANNs.py │ │ ├── DIRGNN.py │ │ ├── GINs.py │ │ ├── GINvirtualnode.py │ │ ├── GSATGNNs.py │ │ ├── LECIGNN.py │ │ ├── MolEncoders.py │ │ ├── Pooling.py │ │ └── __init__.py ├── ood_algorithms │ ├── __init__.py │ ├── algorithms │ │ ├── ASAP.py │ │ ├── BaseOOD.py │ │ ├── CIGA.py │ │ ├── Coral.py │ │ ├── DANN.py │ │ ├── DIR.py │ │ ├── ERM.py │ │ ├── GSAT.py │ │ ├── IRM.py │ │ ├── LECI.py │ │ ├── VREx.py │ │ └── __init__.py │ └── ood_manager.py └── utils │ ├── __init__.py │ ├── args.py │ ├── config_reader.py │ ├── data.py │ ├── evaluation.py │ ├── fast_pytorch_kmeans │ ├── __init__.py │ ├── init_methods.py │ ├── kmeans.py │ └── multi_kmeans.py │ ├── graph_visualize.py │ ├── initial.py │ ├── logger.py │ ├── metric.py │ ├── register.py │ ├── synthetic_data │ ├── BA3_loc.py │ ├── __init__.py │ └── synthetic_structsim.py │ └── train.py ├── LICENSE ├── README.md ├── configs ├── GOOD_configs │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ ├── ASAP.yaml │ │ │ ├── CIGA.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── IRM.yaml │ │ │ ├── LECI.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ ├── ASAP.yaml │ │ │ ├── CIGA.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── IRM.yaml │ │ │ ├── LECI.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ ├── ASAP.yaml │ │ │ ├── CIGA.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── IRM.yaml │ │ │ ├── LECI.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── ASAP.yaml │ │ │ ├── CIGA.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── IRM.yaml │ │ │ ├── LECI.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ └── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ └── base.yaml │ └── base.yaml ├── final_configs │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ ├── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ │ │ └── no_shift │ │ │ ├── CIGA.yaml │ │ │ ├── CIGAv2.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── GroupDRO.yaml │ │ │ ├── IRM.yaml │ │ │ ├── Mixup.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ ├── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ │ └── no_shift │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── CIGAv2.yaml │ │ │ │ ├── Coral.yaml │ │ │ │ ├── DANN.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── GroupDRO.yaml │ │ │ │ ├── IRM.yaml │ │ │ │ ├── Mixup.yaml │ │ │ │ ├── VREx.yaml │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ ├── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ │ │ └── no_shift │ │ │ ├── CIGA.yaml │ │ │ ├── CIGAv2.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── GroupDRO.yaml │ │ │ ├── IRM.yaml │ │ │ ├── Mixup.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ └── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ ├── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ │ │ └── no_shift │ │ │ ├── CIGA.yaml │ │ │ ├── CIGAv2.yaml │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── GroupDRO.yaml │ │ │ ├── IRM.yaml │ │ │ ├── Mixup.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ ├── covariate │ │ │ ├── CIGA.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── LECI.yaml │ │ │ └── base.yaml │ │ │ └── no_shift │ │ │ ├── Coral.yaml │ │ │ ├── DANN.yaml │ │ │ ├── DIR.yaml │ │ │ ├── ERM.yaml │ │ │ ├── GSAT.yaml │ │ │ ├── GroupDRO.yaml │ │ │ ├── IRM.yaml │ │ │ ├── Mixup.yaml │ │ │ ├── VREx.yaml │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ ├── CIGA.yaml │ │ │ │ ├── DIR.yaml │ │ │ │ ├── ERM.yaml │ │ │ │ ├── GSAT.yaml │ │ │ │ ├── LECI.yaml │ │ │ │ └── base.yaml │ │ └── base.yaml │ └── base.yaml └── sweep_configs │ ├── ASAP │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── CIGA │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── Coral │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── DANN │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── DIR │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── ERM │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── FPIIFMotif.yaml │ ├── GOODCMNIST.yaml │ ├── GOODHIV.yaml │ ├── GOODMotif.yaml │ ├── GOODMotif2.yaml │ ├── GOODSST2.yaml │ ├── GOODTwitter.yaml │ ├── GSAT │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── IRM │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ ├── LBAPcore.yaml │ ├── LECI │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ └── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── base.yaml │ └── base.yaml │ ├── VREx │ ├── FPIIFMotif │ │ ├── base.yaml │ │ └── basis │ │ │ ├── FIIF │ │ │ └── base.yaml │ │ │ ├── PIIF │ │ │ └── base.yaml │ │ │ ├── base.yaml │ │ │ ├── concept │ │ │ └── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODCMNIST │ │ ├── base.yaml │ │ └── color │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODHIV │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODMotif2 │ │ ├── base.yaml │ │ ├── basis │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODSST2 │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── GOODTwitter │ │ ├── base.yaml │ │ └── length │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ ├── LBAPcore │ │ ├── assay │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ ├── base.yaml │ │ ├── scaffold │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ │ └── base.yaml │ │ └── size │ │ │ ├── base.yaml │ │ │ └── covariate │ │ │ └── base.yaml │ └── base.yaml │ └── base.yaml ├── environment.yml └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/divelab/LECI/HEAD/.gitignore -------------------------------------------------------------------------------- /GOOD/__init__.py: 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