├── +Neuropixel ├── +DataProcessFn │ ├── commonAverageReference.m │ ├── commonAverageReferenceEachBank.m │ ├── demeanOverTime.m │ └── fft_clean.m ├── +Utils │ ├── GetFullPath.m │ ├── ProgressBar.m │ ├── TensorUtils.m │ ├── brighten.m │ ├── cmocean.m │ ├── colorcet.m │ ├── computeTemplateSimilarity.m │ ├── computeWaveformImageCentroid.m │ ├── configureDataTipsFromUserData.m │ ├── convert.m │ ├── convertColorsToMatrix.m │ ├── darken.m │ ├── discrete_histcounts.m │ ├── discretize_windows.m │ ├── distinguishable_colors.m │ ├── emptyStructArray.m │ ├── errorshadeInterval.m │ ├── evalColorMapAt.m │ ├── generateChannelProximityMatrix.m │ ├── getDefaultChannelMapFile.m │ ├── getMeWtW_nomex.m │ ├── hideInLegend.m │ ├── hsl2rgb.m │ ├── isequaltol.m │ ├── isstringlike.m │ ├── linspecer.m │ ├── lookup_sampleIndexInConcatenatedFile.m │ ├── makeSymLink.m │ ├── makecol.m │ ├── makerow.m │ ├── mkdirRecursive.m │ ├── phy_cluster_colors.m │ ├── plotStackedTraces.m │ ├── pmat.m │ ├── pmatbal.m │ ├── relativepath.m │ ├── rgb2hsl.m │ ├── rugplot.m │ ├── seaborn_color_palette.m │ ├── searchForChannelMapInDirectory.m │ ├── sem.m │ ├── setLineOpacity.m │ ├── setMarkerOpacity.m │ ├── showFirstInLegend.m │ ├── simple_rangesearch.m │ ├── turbomap.m │ └── xcorrAB.m ├── ChannelMap.m ├── ClusterMergeInfo.m ├── ClusterRatingInfo.m ├── ClusterStabilitySummary.m ├── ConcatenationInfo.m ├── ImecDataset.m ├── KilosortDataset.m ├── KilosortMetrics.m ├── KilosortPartialResort.m ├── KilosortTrialSegmentedDataset.m ├── SnippetSet.m ├── TimeShiftSpec.m ├── TrialSegmentationInfo.m ├── exportRezToMat.m ├── exportRezToPhy.m ├── generatePath.m ├── globals.m ├── readINI.m ├── readNPY.m ├── runKilosort1.m ├── runKilosort2.m ├── runKilosort2_modified.m ├── updateChannelMapPhyWithSyncChannels.m ├── writeINI.m └── writeNPY.m ├── .gitignore ├── LICENSE ├── README.md ├── VERSION ├── doc-project └── Release Checklist.md ├── docs ├── acknowledgements.md ├── analysis.md ├── images │ ├── cluster_com.png │ ├── cluster_com_tooltip.png │ ├── cluster_image.png │ ├── cluster_image_zoom.png │ ├── cluster_snippets.png │ ├── cluster_snippets_clean.png │ ├── clustermap.png │ ├── clustermap_colorByAmp.png │ ├── clustermap_smooth.png │ ├── driftmap.png │ ├── driftmap_sensitive.png │ ├── driftmap_standard.png │ ├── driftmap_tsi.png │ ├── driftmap_tsi_excise.png │ ├── driftmap_tsi_mask.png │ ├── imec_inspect.png │ └── waveforms_on_probe.png ├── imec_dataset.md ├── index.md ├── kilosort.md ├── theme │ └── main.html └── waveforms.md ├── map_files ├── neuropixPhase3A_kilosortChanMap.mat ├── neuropixPhase3A_option4_kilosortChanMap.mat ├── neuropixPhase3B1_kilosortChanMap.mat └── neuropixPhase3B2_kilosortChanMap.mat ├── mkdocs.yml ├── trialDataExample.m └── tutorial.ipynb /+Neuropixel/+DataProcessFn/commonAverageReference.m: -------------------------------------------------------------------------------- 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