├── .gitignore ├── Docker ├── Dockerfile ├── Readme.md ├── build.sh ├── env.sh ├── run.sh └── run_tests.sh ├── GeoData └── Readme.md ├── Jenkins ├── README.md ├── run_test.cmd └── run_test.sh ├── R ├── Readme.md ├── analyze_geo_microarrays.R ├── gpl_info.alt.txt ├── gpl_info.txt ├── install_packages.R ├── install_packages.v3.3.x.R ├── methods.txt └── utils.R ├── Readme.md ├── analyze_geo_microarrays.py ├── images ├── result_excel.png └── result_files.png ├── pylintrc ├── requirements-dev.txt ├── requirements.txt ├── test ├── MCF7_E2_CHX.GSE8597.analysis.txt ├── MCF7_E2_CHX.GSE8597.samples.txt ├── Readme.md ├── bad.analysis.txt ├── bad.samples.txt ├── test_R.py ├── test_R_analyze_geo_microarrays.py ├── test_python.py └── test_python_analyze_geo_microarrays.py └── utils ├── Readme.md ├── __init__.py ├── cmd.py └── r.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dlaperriere/GEO_microarrays/HEAD/.gitignore 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