├── LICENSE ├── README.md ├── auxiliary_nuclei_inpaint.py ├── configs └── uda_nuclei_seg │ ├── e2e_mask_rcnn_R_101_FPN_1x_gn_epfl2vnc.yaml │ ├── e2e_mask_rcnn_R_101_FPN_1x_gn_fluo2tcga.yaml │ └── e2e_mask_rcnn_R_101_FPN_1x_gn_fluo2tnbc.yaml ├── datasets ├── epfl2vnc │ ├── annotations │ │ └── tmp │ ├── semgt │ │ └── tmp │ ├── source_images │ │ └── tmp │ └── target_images │ │ └── tmp ├── fluo2tcga │ ├── annotations │ │ ├── fluo2tcga_instance_annotations.json │ │ └── tcga_instance_annotations.json │ ├── raw_source_images │ │ ├── 10_img.png │ │ ├── 11_img.png │ │ ├── 12_img.png │ │ ├── 13_img.png │ │ ├── 14_img.png │ │ ├── 15_img.png │ │ ├── 16_img.png │ │ ├── 17_img.png │ │ ├── 18_img.png │ │ ├── 19_img.png │ │ ├── 1_img.png │ │ ├── 20_img.png │ │ ├── 2_img.png │ │ ├── 3_img.png │ │ ├── 4_img.png │ │ ├── 5_img.png │ │ ├── 6_img.png │ │ ├── 7_img.png │ │ ├── 8_img.png │ │ └── 9_img.png │ ├── semgt │ │ ├── 10_img.png │ │ ├── 11_img.png │ │ ├── 12_img.png │ │ ├── 13_img.png │ │ ├── 14_img.png │ │ ├── 15_img.png │ │ ├── 16_img.png │ │ ├── 17_img.png │ │ ├── 18_img.png │ │ ├── 19_img.png │ │ ├── 1_img.png │ │ ├── 20_img.png │ │ ├── 2_img.png │ │ ├── 3_img.png │ │ ├── 4_img.png │ │ ├── 5_img.png │ │ ├── 6_img.png │ │ ├── 7_img.png │ │ ├── 8_img.png │ │ └── 9_img.png │ ├── source_images │ │ ├── 10_img.png │ │ ├── 11_img.png │ │ ├── 12_img.png │ │ ├── 13_img.png │ │ ├── 14_img.png │ │ ├── 15_img.png │ │ ├── 16_img.png │ │ ├── 17_img.png │ │ ├── 18_img.png │ │ ├── 19_img.png │ │ ├── 1_img.png │ │ ├── 20_img.png │ │ ├── 2_img.png │ │ ├── 3_img.png │ │ ├── 4_img.png │ │ ├── 5_img.png │ │ ├── 6_img.png │ │ ├── 7_img.png │ │ ├── 8_img.png │ │ └── 9_img.png │ └── target_images │ │ ├── 10_img.png │ │ ├── 11_img.png │ │ ├── 12_img.png │ │ ├── 13_img.png │ │ ├── 14_img.png │ │ ├── 15_img.png │ │ ├── 16_img.png │ │ ├── 17_img.png │ │ ├── 18_img.png │ │ ├── 19_img.png │ │ ├── 1_img.png │ │ ├── 20_img.png │ │ ├── 2_img.png │ │ ├── 3_img.png │ │ ├── 4_img.png │ │ ├── 5_img.png │ │ ├── 6_img.png │ │ ├── 7_img.png │ │ ├── 8_img.png │ │ └── 9_img.png └── fluo2tnbc │ ├── annotations │ └── tmp │ ├── semgt │ └── tmp │ ├── source_images │ └── tmp │ └── target_images │ └── tmp ├── inference ├── cell_predictor.py ├── color_instance.py ├── colormap.py ├── epfl2vnc_eva.py ├── epfl2vnc_infer.py ├── fluo2tcga_eva.py ├── fluo2tcga_infer.py ├── fluo2tnbc_eva.py ├── fluo2tnbc_infer.py └── metrics.py ├── maskrcnn_benchmark ├── __init__.py ├── config │ ├── __init__.py │ ├── defaults.py │ └── paths_catalog.py ├── csrc │ ├── ROIAlign.h │ ├── ROIPool.h │ ├── SigmoidFocalLoss.h │ ├── cpu │ │ ├── ROIAlign_cpu.cpp │ │ ├── nms_cpu.cpp │ │ └── vision.h │ ├── cuda │ │ ├── ROIAlign_cuda.cu │ │ ├── ROIPool_cuda.cu │ │ ├── SigmoidFocalLoss_cuda.cu │ │ ├── deform_conv_cuda.cu │ │ ├── deform_conv_kernel_cuda.cu │ │ ├── deform_pool_cuda.cu │ │ ├── deform_pool_kernel_cuda.cu │ │ ├── nms.cu │ │ └── vision.h │ ├── deform_conv.h │ ├── deform_pool.h │ ├── nms.h │ └── vision.cpp ├── data │ ├── README.md │ ├── __init__.py │ ├── build.py │ ├── collate_batch.py │ ├── datasets │ │ ├── __init__.py │ │ ├── abstract.py │ │ ├── cityscapes.py │ │ ├── coco.py │ │ ├── concat_dataset.py │ │ ├── evaluation │ │ │ ├── __init__.py │ │ │ ├── cityscapes │ │ │ │ ├── __init__.py │ │ │ │ ├── cityscapes_eval.py │ │ │ │ └── eval_instances.py │ │ │ ├── coco │ │ │ │ ├── __init__.py │ │ │ │ ├── abs_to_coco.py │ │ │ │ ├── coco_eval.py │ │ │ │ └── coco_eval_wrapper.py │ │ │ └── voc │ │ │ │ ├── __init__.py │ │ │ │ └── voc_eval.py │ │ ├── list_dataset.py │ │ └── voc.py │ ├── samplers │ │ ├── __init__.py │ │ ├── distributed.py │ │ ├── grouped_batch_sampler.py │ │ └── iteration_based_batch_sampler.py │ └── transforms │ │ ├── __init__.py │ │ ├── build.py │ │ └── transforms.py ├── engine │ ├── __init__.py │ ├── bbox_aug.py │ ├── inference.py │ └── trainer.py ├── layers │ ├── __init__.py │ ├── _utils.py │ ├── batch_norm.py │ ├── dcn │ │ ├── __init__.py │ │ ├── deform_conv_func.py │ │ ├── deform_conv_module.py │ │ ├── deform_pool_func.py │ │ └── deform_pool_module.py │ ├── misc.py │ ├── nms.py │ ├── roi_align.py │ ├── roi_pool.py │ ├── sigmoid_focal_loss.py │ └── smooth_l1_loss.py ├── modeling │ ├── __init__.py │ ├── backbone │ │ ├── __init__.py │ │ ├── backbone.py │ │ ├── fbnet.py │ │ ├── fbnet_builder.py │ │ ├── fbnet_modeldef.py │ │ ├── fpn.py │ │ ├── pafpn.py │ │ └── resnet.py │ ├── balanced_positive_negative_sampler.py │ ├── box_coder.py │ ├── detector │ │ ├── __init__.py │ │ ├── detectors.py │ │ └── generalized_rcnn.py │ ├── domain_adaption │ │ ├── BuildLabel.py │ │ ├── DA.py │ │ ├── LabelResizeLayer.py │ │ ├── _init_.py │ │ └── domain_adaption_head.py │ ├── make_layers.py │ ├── matcher.py │ ├── poolers.py │ ├── registry.py │ ├── roi_heads │ │ ├── __init__.py │ │ ├── box_head │ │ │ ├── __init__.py │ │ │ ├── box_head.py │ │ │ ├── inference.py │ │ │ ├── loss.py │ │ │ ├── roi_box_feature_extractors.py │ │ │ └── roi_box_predictors.py │ │ ├── keypoint_head │ │ │ ├── __init__.py │ │ │ ├── inference.py │ │ │ ├── keypoint_head.py │ │ │ ├── loss.py │ │ │ ├── roi_keypoint_feature_extractors.py │ │ │ └── roi_keypoint_predictors.py │ │ ├── mask_head │ │ │ ├── __init__.py │ │ │ ├── inference.py │ │ │ ├── loss.py │ │ │ ├── mask_head.py │ │ │ ├── roi_mask_feature_extractors.py │ │ │ └── roi_mask_predictors.py │ │ └── roi_heads.py │ ├── rpn │ │ ├── __init__.py │ │ ├── anchor_generator.py │ │ ├── inference.py │ │ ├── loss.py │ │ ├── retinanet │ │ │ ├── __init__.py │ │ │ ├── inference.py │ │ │ ├── loss.py │ │ │ └── retinanet.py │ │ ├── rpn.py │ │ └── utils.py │ └── utils.py ├── solver │ ├── __init__.py │ ├── build.py │ └── lr_scheduler.py ├── structures │ ├── __init__.py │ ├── bounding_box.py │ ├── boxlist_ops.py │ ├── image_list.py │ ├── keypoint.py │ └── segmentation_mask.py └── utils │ ├── README.md │ ├── __init__.py │ ├── c2_model_loading.py │ ├── checkpoint.py │ ├── collect_env.py │ ├── comm.py │ ├── cv2_util.py │ ├── env.py │ ├── imports.py │ ├── logger.py │ ├── metric_logger.py │ ├── miscellaneous.py │ ├── model_serialization.py │ ├── model_zoo.py │ ├── registry.py │ └── timer.py ├── nuclei_inpaint ├── inpaint_synthesized_patches │ ├── 1.png │ ├── 10.png │ ├── 11.png │ ├── 12.png │ ├── 2.png │ ├── 3.png │ ├── 4.png │ ├── 5.png │ ├── 6.png │ ├── 7.png │ ├── 8.png │ └── 9.png ├── raw_synthesized_patches │ ├── 1.png │ ├── 10.png │ ├── 11.png │ ├── 12.png │ ├── 2.png │ ├── 3.png │ ├── 4.png │ ├── 5.png │ ├── 6.png │ ├── 7.png │ ├── 8.png │ └── 9.png └── synthesized_labels │ ├── 1.png │ ├── 10.png │ ├── 11.png │ ├── 12.png │ ├── 2.png │ ├── 3.png │ ├── 4.png │ ├── 5.png │ ├── 6.png │ ├── 7.png │ ├── 8.png │ └── 9.png ├── requirements.txt ├── setup.py ├── tests ├── checkpoint.py ├── env_tests │ └── env.py ├── test_backbones.py ├── test_box_coder.py ├── test_configs.py ├── test_data_samplers.py ├── test_detectors.py ├── test_fbnet.py ├── test_feature_extractors.py ├── test_metric_logger.py ├── test_nms.py ├── test_predictors.py ├── test_rpn_heads.py 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