74 | {% endblock %}
75 |
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/README.md:
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1 | # nppes_fhir_demo
2 | A simple hack/demonstration of how to search and access a locally-copied CMS provider directory (NPPES) via elasticsearch and early DST FHIR services
3 |
4 | Addendum Aug 2018 - some additional hacks to this otherwise abandoned project:
5 |
6 | - upgraded to python 3
7 | - upgraded to elasticsearch 6.*
8 | - added a few demo tweaks to the search form
9 |
10 | NOTE what's still missing (and won't likely get added)
11 |
12 | - does not support current FHIR resources - sorry, but this was merely to prove that it could be done!
13 | - does not support the new CMS "endpoints" directory information
14 | - does not support the relatively new CMS "additional names" and "secondary address" files
15 |
16 |
17 | ### Requires:
18 |
19 | - Python 3
20 | - Elasticsearch - to serve as database for NPPES records (Lucene)
21 | - Flask - simple python web server
22 | - gunicorn - WSGI gateway to expose the Flask app to the web
23 |
24 |
25 | ## Very brief instructions:
26 |
27 | - Install and launch Elasticsearch. I took all the defaults, which is overkill, but it works. On the mac, 'brew' can install elasticsearch and kibana with no problems. To use the phonetic analyzer, you will also need to install the phonetic plugin, using something like this:
28 | - ```sudo bin/elasticsearch-plugin install analysis-phonetic```
29 | - Use python to "pip install" Flask, elasticsearch, and gunicorn
30 | - Run the "download.sh" script in NPPES_data to download the NPPES file from CMS, and the "taxonomy" file from NUCC. You might need to edit this file to refer to a more recent CMS distribution of the NPPES database!
31 | - the bulk_load_nppes script can now read directly from the zip file, so there is no need to extract the 5GB CSV file
32 | - Run 'python bulk_load_nppes'
33 | - It should find the right ZIP and CSV files. If not, pass them in on the comand line.
34 | - It should default to point to your local install of ElasticSearch. If not, look in the code to see which environment variables to set to point to your instance of ES.
35 | - Loading the ~4.2M records takes about 5-6 minutes on my i7/SSD. Ignore the error messages about non-Ascii provider entries. That's a bug to be fixed, but obly drops a relatively few provider names. You only need to load the provider records into elasticsearch once, of course.
36 | - Run "python serve_nppes' to test locally (defaults to 127.0.0.1:5000/nppes_fhir)
37 | - Optionally deploy to web by running gunicorn to serve up serve_nppes:app (the WSGI entry point.)
38 | - `gunicorn -b 0.0.0.0:80 -w 4 serve_nppes:app`
39 |
40 |
41 | More details:
42 |
43 | Set up git, Python 3, and elasticsearch (somewhere network accessible), then:
44 |
45 | ```
46 | make sure elasticsearch is running somewhere accessible - the loader program will configure the necessary index
47 | git clone https://github.com/dmccallie/nppes_fhir_demo/
48 | cd nppes_fhir_demo
49 | pip install -r requirements.txt
50 | cd NPPES_data
51 | sh ./download.sh
52 | cd ../nppes_fhir_demo
53 | python load_nppes_bulk.py
54 |
55 | # in local env
56 | python serve_nppes.py
57 |
58 | # in prod
59 | gunicorn -b 0.0.0.0:8080 serve_nppes:app
60 | ```
61 |
62 | ## Dockerized version - NOTE: this is NOT been kept up to date. You will have to change some things.
63 |
64 | ### Requirements
65 |
66 | * Install docker (https://docs.docker.com/installation/)
67 | * Install docker-compose (https://docs.docker.com/compose/install/)
68 |
69 | ### Setup
70 |
71 | * Launch the stack: `docker-compose up`
72 | * Load sample data: `docker-compose run web /code/nppes_fhir_demo/load_data.sh`
73 | * Try it: browse to http://container/nppes_fhir or http://host:8888/nppes_fhir
74 | * View logs `docker-compose logs`
75 |
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/nppes_fhir_demo/load_nppes_bulk.py:
--------------------------------------------------------------------------------
1 | #dpm - 15Aug2018 - updated to python3
2 | import csv, sys
3 | from datetime import datetime
4 | from elasticsearch import Elasticsearch
5 | from elasticsearch import helpers
6 | import json
7 | import time
8 | import os
9 | import argparse
10 | import zipfile
11 |
12 | parser = argparse.ArgumentParser(description='Bulk load NPPES data')
13 | parser.add_argument('npifile', metavar='N', nargs='?', help='Path to NPI data file',
14 | #defaults to the May zip file - may need to edit this
15 | #dpm 15Aug2018 - changed to a more recent dissemination
16 | default="../NPPES_data/NPPES_Data_Dissemination_August_2018.zip")
17 | parser.add_argument('nuccfile', metavar='N', nargs='?', help='Path to NUCC data file',
18 | default="../NPPES_data/nucc_taxonomy_150.csv")
19 | args = parser.parse_args()
20 |
21 | nppes_file = args.npifile #download this 5GB file from CMS!
22 | nucc_file = args.nuccfile
23 |
24 | #this is the reference data used to specificy provider's specialties
25 | def load_taxonomy(nucc):
26 | nucc_dict = {}
27 | with open(nucc, encoding='latin-1') as nucc_file:
28 | nucc_reader = csv.DictReader(nucc_file)
29 | for row in nucc_reader:
30 | code = row['Code']
31 | classification = row['Classification']
32 | specialization = row['Specialization']
33 | if code and classification:
34 | nucc_dict[code] = classification + " " + specialization
35 | return nucc_dict
36 |
37 | def get_specialty(nucc_dict, code_1, code_2, code_3):
38 | #just concatenate together for now
39 | #print (code_1, code_2, code_3)
40 | out = ""
41 | if (code_1):
42 | out += nucc_dict[code_1]
43 | if (code_2):
44 | out += " / " + nucc_dict[code_2]
45 | if (code_3):
46 | out += " / " + nucc_dict[code_3]
47 | return out
48 |
49 | def extract_provider(row, nucc_dict):
50 | #creates the Lucene "document" to define this provider
51 | #assumes this is a valid provider
52 | provider_document = {}
53 | provider_document['npi'] = row['NPI']
54 | provider_document['firstname'] = row['Provider First Name']
55 | provider_document['lastname'] = row['Provider Last Name (Legal Name)']
56 | provider_document['mail_address_1'] = row['Provider First Line Business Mailing Address']
57 | provider_document['mail_address_2'] = row['Provider Second Line Business Mailing Address']
58 | provider_document['city'] = row['Provider Business Mailing Address City Name']
59 | provider_document['state_abbrev'] = row['Provider Business Mailing Address State Name']
60 | provider_document['credential'] = row['Provider Credential Text'].replace(".","")
61 | provider_document['spec_1'] = nucc_dict.get(row['Healthcare Provider Taxonomy Code_1'],'')
62 | provider_document['spec_2'] = nucc_dict.get(row['Healthcare Provider Taxonomy Code_2'],'')
63 | provider_document['spec_3'] = nucc_dict.get(row['Healthcare Provider Taxonomy Code_3'],'')
64 |
65 | #pseudo field for searching any part of an address
66 | #by creating this as one field, it's easy to do wildcard searches on any combination of inputs
67 | #but it does waste a few hundred MB.
68 | provider_document['full_address'] = provider_document['mail_address_1'] + " " + \
69 | provider_document['mail_address_2'] + " " + \
70 | provider_document['city'] + " " + \
71 | provider_document['state_abbrev']
72 |
73 | #experiment with an "all" field to allow for a single query line that doesn't require field-by-field query
74 | provider_document['all'] = provider_document['firstname'] + " " + \
75 | provider_document['lastname'] + " " + \
76 | provider_document['full_address'] + " " + \
77 | provider_document['credential'] + " " + \
78 | provider_document['spec_1'] + " " + \
79 | provider_document['spec_2'] + " " + \
80 | provider_document['spec_3']
81 |
82 | return provider_document
83 |
84 | def convert_to_json(row, nucc_dict):
85 | #some kind of funky problem with non-ascii strings here
86 | #trap and reject any records that aren't full ASCII.
87 | #fix me!
88 |
89 | provider_doc = extract_provider(row, nucc_dict)
90 | try:
91 | j = json.dumps(provider_doc, ensure_ascii=True)
92 | #print("Successful json for ", j)
93 | except Exception:
94 | print("FAILED convert a provider record to ASCII = ", row['NPI'])
95 | #print("Unexpected error:", sys.exc_info()[0])
96 | j = None
97 | return j
98 |
99 | #create a python iterator for ES's bulk load function
100 | def iter_nppes_data(nppes_file, nucc_dict, convert_to_json):
101 | count = 0
102 | #extract directly from the zip file
103 | zipFileInstance = zipfile.ZipFile(nppes_file, mode='r', allowZip64=True)
104 | for zipInfo in zipFileInstance.infolist():
105 | #hack - the name can change, so just use the huge CSV. That's the one
106 | if zipInfo.file_size > 4000000000:
107 | print("found NPI CSV file = ", zipInfo.filename)
108 | content = zipFileInstance.open(zipInfo, 'r') #can't use 'rt' anymore
109 | decoded_content = (line.decode('utf8') for line in content) #funky trick to turn py3 bytes to string
110 | reader = csv.DictReader(decoded_content)
111 | for row in reader:
112 | #print("GOT A ROW = ", row['Provider Last Name (Legal Name)'])
113 | if not row['NPI Deactivation Date'] and row['Entity Type Code'] == '1':
114 | if (row['Provider Last Name (Legal Name)']):
115 | npi = row['NPI']
116 | body = convert_to_json(row, nucc_dict)
117 | if (body):
118 | #action instructs the bulk loader how to handle this record
119 | action = {
120 | "_index": "nppes",
121 | "_type": "provider",
122 | "_id": npi,
123 | "_source": body
124 | }
125 | count += 1
126 | if count % 5000 == 0:
127 | print("Count: Loaded {} records".format(count))
128 | yield action
129 |
130 |
131 | #dpm 16Aug2018 - added explict creation of indexes to optimize for space, etc
132 |
133 | def create_index(es_object, index_name):
134 | created = False
135 | # index settings
136 | settings = {
137 | "settings": {
138 | "index" : {
139 | "number_of_shards": 2, #doesn't work???
140 | "number_of_replicas": 0,
141 | },
142 | "index" : {
143 | "analysis" : {
144 | "filter" : {
145 | "synonym" : {
146 | "type" : "synonym",
147 | "synonyms" : [ #some examples, should be in separate file, etc
148 | "internist => internal",
149 | "gi => gastroenterology",
150 | "knife => surgical, surgeon, surgery",
151 | "obgyn => obstetrics, gynecology",
152 | "peds => pediatric, pediatrics"
153 | ]
154 | },
155 | "test_phonetic": {
156 | "type": "phonetic",
157 | "encoder": "double_metaphone",
158 | "replace": False
159 | }
160 | },
161 | "analyzer" : {
162 | "synonym" : {
163 | "tokenizer" : "standard",
164 | "filter" : [
165 | "lowercase", "synonym"
166 | ]
167 | },
168 | "phonetic": {
169 | "tokenizer": "standard",
170 | "filter": [
171 | "standard", "lowercase", "test_phonetic"
172 | ]
173 | }
174 | },
175 | },
176 | },
177 | },
178 | "mappings": {
179 | "provider": {
180 | "dynamic": "strict",
181 | "properties": {
182 | "npi": { "type": "text"},
183 | "firstname": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
184 | "lastname": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
185 | "mail_address_1": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
186 | "mail_address_2": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
187 | "city": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
188 | "state_abbrev": { "type": "text", "norms": False, "index_options": "freqs" },
189 | "credential": { "type": "text", "norms": False, "index_options": "freqs" },
190 | "spec_1": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "synonym" },
191 | "spec_2": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "synonym" },
192 | "spec_3": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "synonym" },
193 |
194 | #pseudo-fields
195 | "full_address": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "phonetic" },
196 | "all": { "type": "text", "norms": False, "index_options": "freqs", "analyzer" : "synonym" },
197 | },
198 | },
199 | #"_doc": {
200 | # "_source": {
201 | # "excludes": [
202 | # "*.all", #dpm - this doesn't appear to work, don't know why.
203 | # ]
204 | # }
205 | #}
206 | }
207 | }
208 | try:
209 | if es_object.indices.exists(index_name):
210 | es_object.indices.delete(index=index_name, ignore=400)
211 | print("Deleted old index")
212 |
213 | # Ignore 400 means to ignore "Index Already Exist" error.
214 | es_object.indices.create(index=index_name, body=settings)
215 | print('Created new index at {}'.format(index_name))
216 | created = True
217 | except Exception as ex:
218 | print("index creation exception: ", str(ex))
219 | finally:
220 | return created
221 |
222 |
223 | #main code starts here
224 |
225 | if __name__ == '__main__':
226 | count = 0
227 | nucc_dict = load_taxonomy(nucc_file)
228 | es_server = os.environ.get('ESDB_PORT_9200_TCP_ADDR') or '127.0.0.1'
229 | es_port = os.environ.get('ESDB_PORT_9200_TCP_PORT') or '9200'
230 |
231 | es = Elasticsearch([
232 | '%s:%s'%(es_server, es_port) #point this to your elasticsearch service endpoint
233 | ])
234 |
235 | start = time.time()
236 | print ("start at", start)
237 |
238 | create_index(es, index_name='nppes')
239 |
240 | #invoke ES bulk loader using the iterator
241 | helpers.bulk(es, iter_nppes_data(nppes_file,nucc_dict,convert_to_json))
242 |
243 | print ("total time - seconds", time.time()-start)
244 |
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/nppes_fhir_demo/serve_nppes.py:
--------------------------------------------------------------------------------
1 | #dpm 15Aug2018 - ported to python3
2 |
3 | from flask import Flask, jsonify, render_template, request, Response
4 | import elasticsearch
5 | import json
6 | import urllib, urllib.parse
7 | from collections import OrderedDict #use ordered dictionary to preserve JSON order
8 | from uuid import uuid4
9 |
10 | #creates WSGI entry point for gunicorn
11 | app = Flask(__name__)
12 | es = ""
13 |
14 |
15 | #starting point for FHIR Practivtioner demo - yields the search form
16 | @app.route('/nppes_fhir')
17 | def nppes_fhir():
18 | return render_template('fhir_index.html')
19 |
20 |
21 | #FHIR Practitioner by /npi
22 | @app.route('/nppes/Practitioner/', methods=['GET'])
23 | def handle_npi_lookup(npi):
24 | #query was for a specific provider
25 | #return the FHIR Practitioner record
26 | #npi = request.args.get('_id', '').strip()
27 | query = "npi:" + npi
28 | try:
29 | es_reply = es.search(index='nppes', doc_type="provider", q=query)
30 | except:
31 | print("FAILED to query ES ")
32 | raise
33 | if (es_reply and (es_reply['hits']['total'] == 1)):
34 |
35 | hits = es_reply['hits']['hits']
36 |
37 | prac = build_fhir_Practitioner(hits[0]['_source'])
38 | return Response(json.dumps(prac, indent=2, separators=(',', ': ')), mimetype="application/json")
39 |
40 | else:
41 | return jsonify("")
42 |
43 |
44 |
45 | #FHIR Practitioner search service - returns FHIR Bundle of matching Pracitioner matches
46 | @app.route('/nppes/Practitioner', methods=['GET'])
47 | def fhir_lookup():
48 |
49 | #only supports these FHIR fields for demo
50 | anystring = request.args.get('anystring', '').strip() #dpm - added for demo of open-ended query approach
51 | npi = request.args.get('_id', '').strip()
52 | family = request.args.get('family', '').strip()
53 | given = request.args.get('given', '').strip()
54 | address = request.args.get('address', '').strip()
55 | qualification = request.args.get('qualification', '').strip()
56 | #specialty_code = request.args.get('specialty').strip() #for now, this gets IGNORED!
57 | specialty_text = request.args.get('specialty:text', '').strip() #FHIR uses :text for text search on tokens
58 | page = request.args.get('page', 1, type=int) #which page to start with
59 | count = request.args.get('_count', 15, type=int) #results per page
60 |
61 | #calculate starting point
62 | startfrom = (page-1) * count
63 |
64 | queryText = ""
65 | wildcard = "*" #lucene wildcard is applied to some of the search parameters
66 | fuzzy = "~"
67 |
68 | #if 'anystring' is not empty, do the whole query with terms contained in the string
69 | #this means no special weighting of lastname, etc
70 | #it's an experiment
71 |
72 | if len(anystring)>0:
73 | #strip periods and dashes
74 | anystring = anystring.replace(".","").replace("-","")
75 | #split into words to form query terms
76 | #test support of wildcard AND fuzzy match, using an "OR" approach
77 | #e.g., to query for "mcca~*" will try (mcca~ OR mcca*) -- maybe less explosion?
78 | #note that you can do "term~*" but the term explosion is huge
79 |
80 | queryText = "all:( " #force query against the "all" field
81 | for term in anystring.split():
82 | #synonyms don't work if wildcard or fuzzy is added to term. weird.
83 | queryText += "( {t} OR {t}{f} OR {t}{w} )".format(t=term, f=fuzzy, w=wildcard)
84 | queryText += " )"
85 |
86 | else:
87 |
88 | #build a Lucene query string - see Lucene documentation for syntax
89 | #dpm - for phonectic experiments, drop the wildcard for the phonetic, but OR it in for non-phonetic
90 | # probably ought to have separate fields for the phonetic vs non-phonetic??
91 |
92 | wildcard = "*"
93 | if family:
94 | queryText += "lastname:( {f} OR {f}{w} )^4 ".format(f=family, w=wildcard)
95 | if given:
96 | queryText += "firstname:( {g} OR {g}{w} ) ".format(g=given,w=wildcard)
97 | if address:
98 | #apply wildcard to each part of whatever user entered (street, city, state code)
99 | for term in address.split():
100 | #this is a hack - probably need these fields to be individually named
101 | # hack2 = if field is len==2, assume it's a state code (fixme doh!)
102 | if len(term) == 2:
103 | queryText += "full_address:({t}) ".format(t=term)
104 | else:
105 | queryText += "full_address:( {t} OR {t}{w} ) ".format(t=term, w=wildcard)
106 |
107 | if qualification: queryText += "credential:" + qualification + " "
108 | if specialty_text:
109 | specText = ""
110 | #allow for either spec_1 OR spec_2 to qualify. Everything else is an AND
111 | for term in specialty_text.split():
112 | #in order for synonyms to work, you need the term without the wildcard???
113 | wildcard = "*"
114 | specText += " spec_1:({t} OR {t}{w}) OR spec_2:({t} OR {t}{w}) ".format(t=term, w=wildcard)
115 |
116 | queryText += " (" + specText + ") "
117 |
118 | print ("generated Lucene query = ", queryText) #debug
119 |
120 | #invoke ElasticSearch using the "lucene query mode"
121 | try:
122 | es_reply = es.search(index='nppes', default_operator="AND", size=count, from_=startfrom, q=queryText)
123 | except:
124 | print ("FAILED to query ES ")
125 | raise
126 | #print "es reply = ", es_reply
127 |
128 | data = ""
129 | total = es_reply['hits']['total'] #total matches
130 | time = es_reply['took'] #milliseconds of ES time
131 |
132 | #get root of results
133 | #print("es reply = ", es_reply)
134 |
135 | hits = es_reply['hits']['hits']
136 | providers = []
137 | if (len(hits) > 0):
138 | done = False
139 | for h in hits:
140 | src = h['_source']
141 | a_doc = build_fhir_Practitioner(src)
142 | providers.append(a_doc)
143 | else:
144 | done = True
145 |
146 | #calculate URLs for next and prev page.
147 | request_params = request.args.copy()
148 |
149 | if ((not done) and len(providers) >= count):
150 | request_params['page'] = page + 1
151 | nextUrl = request.base_url + "?" + urllib.parse.urlencode(request_params)
152 | else:
153 | nextUrl = ''
154 |
155 | if page > 1:
156 | request_params['page'] = page - 1
157 | prevUrl = request.base_url + "?" + urllib.parse.urlencode(request_params)
158 | else:
159 | prevUrl = ''
160 |
161 |
162 | the_bundle = build_fhir_bundle(total, time, providers, nextUrl, prevUrl, startfrom)
163 |
164 | #use Flask Response class instead of jsonify() in order to control JSON use of OrderedDict
165 | return Response(json.dumps(the_bundle, indent=2, separators=(',', ': ')), mimetype="application/json")
166 |
167 | #utility routines
168 | def build_fhir_Practitioner(es_provider_doc):
169 | #convert the results of an ES match to FHIR Practitioner record format
170 | #build with python structures and then JSONify
171 | #this is a total hack approach. proof of concept with lots of gaps!
172 | # NOTE: this is a very old version of FHIR's Practitioner! Needs to be re-mapped to newer STU
173 |
174 | prac = OrderedDict() #allows preservation of dictionary names, for easier debugging
175 | #note that OrderedDict literal inits are ugly, e.g.: OrderedDict( [ (tuple), (tuple) ] )
176 |
177 | prac['resourceType'] = "Practitioner"
178 | prac['id'] = es_provider_doc.get('npi',"0")
179 | prac['identifier'] = [OrderedDict([
180 | ('use', "official"),
181 | ('system', "http://hl7.org/fhir/sid/us-NPI????"),
182 | ('value', es_provider_doc.get('npi',"0")),
183 | ])]
184 | prac['name'] = OrderedDict([
185 | ("use", "official"),
186 | ("family", [ es_provider_doc.get('lastname')]),
187 | ("given", [ es_provider_doc.get('firstname')]),
188 | ("suffix", [ es_provider_doc.get('credential')])
189 | ])
190 | prac['gender'] = "unknown"
191 | address_line = es_provider_doc.get('mail_address_1')
192 | if es_provider_doc.get('mail_address_2'):
193 | address_line += " " + es_provider_doc.get('mail_address_2')
194 | prac['address'] = OrderedDict([
195 | ("use", "work"),
196 | ("line", [ address_line ]),
197 | ("city", es_provider_doc.get('city')),
198 | ("state", es_provider_doc.get('state_abbrev')),
199 | ("country", "USA")
200 | ])
201 | prac['telecom'] = [ OrderedDict([
202 | ("extension", [
203 | {
204 | "url" : "http://hl7.org/fhir/StructureDefinition/us-core-direct",
205 | "valueBoolean" : True
206 | }
207 | ]),
208 | ("system", "email"),
209 | ("value", es_provider_doc.get('firstname')[0:1] + "." + es_provider_doc.get('lastname') + "@direct.somehist.com"),
210 | ("use", "work")
211 | ])]
212 |
213 | if es_provider_doc.get('spec_1'):
214 | prac['practitionerRole'] = [{
215 | "specialty": [
216 | {
217 | "coding": [{
218 | "system": "http://www.wpc-edi.com/codes/taxonomy",
219 | "code": "??"
220 | }],
221 | "text": es_provider_doc.get('spec_1')
222 | }]
223 | }]
224 | if es_provider_doc.get('spec_2'):
225 | prac['practitionerRole'][0]['specialty'].append(
226 | {
227 | "coding": [{
228 | "system": "http://www.wpc-edi.com/codes/taxonomy",
229 | "code": "??"
230 | }],
231 | "text": es_provider_doc.get('spec_2')
232 | }
233 | )
234 |
235 | return prac
236 |
237 | def build_fhir_bundle(total, time, providers, nextUrl, prevUrl, startfrom):
238 | #wrap the results into a FHIR bundle. Ugh.
239 |
240 | bundle = OrderedDict()
241 |
242 | #first, some header stuff.
243 | bundle["resourceType"] = "Bundle"
244 | bundle["id"] = str(uuid4()) #not sure why we need this, but GG says so
245 | bundle["type"] = "searchset"
246 | bundle["base"] = "http://davidmccallie.com/nppes"
247 | bundle["total"] = total
248 |
249 | #set up the pageing links
250 | bundle["link"] = [
251 | {
252 | "relation": "next",
253 | "url": nextUrl
254 | },
255 | {
256 | "relation" : "prev",
257 | "url" : prevUrl
258 | }
259 | ]
260 |
261 | #then, convert each matching practitioner into a entry.resource
262 | bundle["entry"] = []
263 | for prov in providers:
264 | bundle["entry"].append({ "resource" : prov})
265 |
266 | return bundle
267 |
268 |
269 | #main program here
270 |
271 | import os
272 | es_server = os.environ.get('ESDB_PORT_9200_TCP_ADDR') or '127.0.0.1'
273 | es_port = os.environ.get('ESDB_PORT_9200_TCP_PORT') or '9200'
274 |
275 | try:
276 | es = elasticsearch.Elasticsearch([
277 | '%s:%s'%(es_server, es_port) #point this to your elasticsearch service endpoint
278 | ])
279 | print ("connected to ES")
280 | except:
281 | print ("FAILED to connect to ES ")
282 | raise
283 |
284 | #if called locally (without gunicorn) then run on localhost port 5000 for debugging
285 | #otherwise, gunicorn will invoke the "app" entrypoint for WSGI conversation
286 | if __name__ == '__main__':
287 | app.run(host="127.0.0.1", port=5000, debug=True)
288 |
--------------------------------------------------------------------------------
/nppes_fhir_demo/templates/fhir_index.html:
--------------------------------------------------------------------------------
1 |
2 | {% extends "layout.html" %}
3 | {% block content %}
4 |
5 |
6 |
197 |
198 |
199 |
202 |
203 |
228 |
229 |
230 |
241 |
242 | Matching Providers
243 |
244 |
245 |
246 |
247 |
248 |
249 |
250 |
251 |
252 |
253 |
254 |
NPI
255 |
First Name
256 |
Last Name
257 |
Credential
258 |
Address
259 |
Direct
260 |
Specialty
261 |
Sub-specialty
262 |
263 |
264 |
265 |
266 |
267 |
NPI
268 |
First Name
269 |
Last Name
270 |
Credential
271 |
Address
272 |
Direct
273 |
Specialty
274 |
Sub-specialty
275 |
276 |
277 |
278 |
279 | {% endblock %}
280 |
--------------------------------------------------------------------------------
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