├── .coveragerc ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── .travis.yml ├── CHANGES.rst ├── CONTRIBUTORS.rst ├── LICENSE.rst ├── MANIFEST.in ├── README.rst ├── docs ├── Makefile ├── changes.rst ├── conf.py ├── contributors.rst ├── index.rst ├── license.rst ├── logging.rst ├── options.rst ├── pics │ └── communication.png ├── poap.rst ├── quickstart.rst ├── requirements.txt ├── source_code.rst └── surrogate_optimization.rst ├── examples ├── ackley.m ├── example_checkpointing_serial.py ├── example_checkpointing_threaded.py ├── example_ei.py ├── example_extra_vals.py ├── example_gp_regression.py ├── example_lcb.py ├── example_mars.py ├── example_matlab_engine.py ├── example_simple.py ├── example_sop.py ├── example_subprocess.py ├── example_subprocess_files.py ├── example_subprocess_partial_info.py ├── makefile ├── mpiexample_simple.py ├── mpiexample_subprocess.py ├── sphere_ext ├── sphere_ext.cpp ├── sphere_ext_files ├── sphere_ext_files.cpp ├── sumfun_ext └── sumfun_ext.cpp ├── notebooks ├── example_optimization_dycors.ipynb ├── example_srbf_sampling.ipynb └── example_surrogates.ipynb ├── pySOT ├── __init__.py ├── auxiliary_problems │ ├── __init__.py │ ├── candidate_dycors.py │ ├── candidate_srbf.py │ ├── candidate_uniform.py │ ├── ei_ga.py │ ├── ei_merit.py │ ├── lcb_ga.py │ └── lcb_merit.py ├── controller │ ├── __init__.py │ └── controller.py ├── experimental_design │ ├── __init__.py │ ├── experimental_design.py │ ├── lhd.py │ ├── slhd.py │ └── two_factorial.py ├── optimization_problems │ ├── __init__.py │ ├── ackley.py │ ├── branin.py │ ├── exponential.py │ ├── goldstein_price.py │ ├── griewank.py │ ├── hartmann3.py │ ├── hartmann6.py │ ├── himmelblau.py │ ├── levy.py │ ├── michaelewicz.py │ ├── optimization_problem.py │ ├── perm.py │ ├── rastrigin.py │ ├── rosenbrock.py │ ├── schwefel.py │ ├── six_hump_camel.py │ ├── sphere.py │ ├── sum_of_squares.py │ ├── weierstrass.py │ └── zakharov.py ├── strategy │ ├── __init__.py │ ├── dycors_strategy.py │ ├── ei_strategy.py │ ├── lcb_strategy.py │ ├── random_strategy.py │ ├── sop_strategy.py │ ├── srbf_strategy.py │ └── surrogate_strategy.py ├── surrogate │ ├── __init__.py │ ├── gp.py │ ├── kernels │ │ ├── __init__.py │ │ ├── cubic_kernel.py │ │ ├── kernel.py │ │ ├── linear_kernel.py │ │ └── tps_kernel.py │ ├── mars.py │ ├── output_transformations │ │ ├── __init__.py │ │ ├── identity.py │ │ └── median_capping.py │ ├── poly.py │ ├── rbf.py │ ├── surrogate.py │ └── tails │ │ ├── __init__.py │ │ ├── constant_tail.py │ │ ├── linear_tail.py │ │ └── tail.py └── utils.py ├── setup.cfg ├── setup.py └── tests ├── test_auxiliary_problems.py ├── test_controller.py ├── test_experimental_designs.py ├── test_optimization_problems.py ├── test_strategies.py ├── test_surrogates.py └── test_utils.py /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dme65/pySOT/HEAD/.coveragerc 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