├── LICENSE ├── README.md ├── doc ├── Makefile └── source │ ├── bam_viewer.png │ ├── conf.py │ ├── coverage_plot.png │ ├── description.rst │ ├── genome_features_dashboard.gif │ ├── index.rst │ ├── logo.png │ ├── modules.rst │ ├── pybioviz.rst │ ├── sequence_align_plot.png │ ├── sequence_aligner_dashboard.gif │ ├── sequence_plot.png │ ├── sequence_plot2.png │ └── usage.rst ├── img └── logo.svg ├── notebooks ├── bam_view.ipynb ├── basics.ipynb ├── fastq_view.ipynb ├── genome_view.ipynb ├── mummer_align_view.ipynb ├── sequence_aligner.ipynb ├── tests.ipynb └── tree_view.ipynb ├── pybioviz ├── __init__.py ├── app.py ├── dashboards.py ├── data │ ├── test.aln │ ├── test.dnd │ └── test.fa ├── description.txt ├── plotters.py ├── templates │ ├── base.html │ └── custom.css └── utils.py ├── setup.py └── snap ├── gui └── icon.png └── snapcraft.yaml /LICENSE: -------------------------------------------------------------------------------- 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