├── .gitignore ├── .hgignore ├── .hgtags ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.rst ├── cec2013lsgo ├── Benchmarks.cpp ├── Benchmarks.h ├── F1.cpp ├── F1.h ├── F10.cpp ├── F10.h ├── F11.cpp ├── F11.h ├── F12.cpp ├── F12.h ├── F13.cpp ├── F13.h ├── F14.cpp ├── F14.h ├── F15.cpp ├── F15.h ├── F2.cpp ├── F2.h ├── F3.cpp ├── F3.h ├── F4.cpp ├── F4.h ├── F5.cpp ├── F5.h ├── F6.cpp ├── F6.h ├── F7.cpp ├── F7.h ├── F8.cpp ├── F8.h ├── F9.cpp ├── F9.h ├── Header.h ├── Makefile ├── README.rst ├── __init__.py ├── cdatafiles │ ├── F1-xopt.txt │ ├── F10-R100.txt │ ├── F10-R25.txt │ ├── F10-R50.txt │ ├── F10-p.txt │ ├── F10-s.txt │ ├── F10-w.txt │ ├── F10-xopt.txt │ ├── F11-R100.txt │ ├── F11-R25.txt │ ├── F11-R50.txt │ ├── F11-p.txt │ ├── F11-s.txt │ ├── F11-w.txt │ ├── F11-xopt.txt │ ├── F12-xopt.txt │ ├── F13-R100.txt │ ├── F13-R25.txt │ ├── F13-R50.txt │ ├── F13-p.txt │ ├── F13-s.txt │ ├── F13-w.txt │ ├── F13-xopt.txt │ ├── F14-R100.txt │ ├── F14-R25.txt │ ├── F14-R50.txt │ ├── F14-p.txt │ ├── F14-s.txt │ ├── F14-w.txt │ ├── F14-xopt.txt │ ├── F15-xopt.txt │ ├── F2-xopt.txt │ ├── F3-xopt.txt │ ├── F4-R100.txt │ ├── F4-R25.txt │ ├── F4-R50.txt │ ├── F4-p.txt │ ├── F4-s.txt │ ├── F4-w.txt │ ├── F4-xopt.txt │ ├── F5-R100.txt │ ├── F5-R25.txt │ ├── F5-R50.txt │ ├── F5-p.txt │ ├── F5-s.txt │ ├── F5-w.txt │ ├── F5-xopt.txt │ ├── F6-R100.txt │ ├── F6-R25.txt │ ├── F6-R50.txt │ ├── F6-p.txt │ ├── F6-s.txt │ ├── F6-w.txt │ ├── F6-xopt.txt │ ├── F7-R100.txt │ ├── F7-R25.txt │ ├── F7-R50.txt │ ├── F7-p.txt │ ├── F7-s.txt │ ├── F7-w.txt │ ├── F7-xopt.txt │ ├── F8-R100.txt │ ├── F8-R25.txt │ ├── F8-R50.txt │ ├── F8-p.txt │ ├── F8-s.txt │ ├── F8-w.txt │ ├── F8-xopt.txt │ ├── F9-R100.txt │ ├── F9-R25.txt │ ├── F9-R50.txt │ ├── F9-p.txt │ ├── F9-s.txt │ ├── F9-w.txt │ └── F9-xopt.txt ├── cec2013.cpp ├── cec2013.pyx ├── demo.cpp ├── demo2.cpp ├── eval_func.cpp └── eval_func.h ├── setup.cfg ├── setup.py ├── tests └── test_bench.py └── tox.ini /.gitignore: -------------------------------------------------------------------------------- 1 | # Byte-compiled / optimized / DLL files 2 | __pycache__/ 3 | *.py[cod] 4 | 5 | # C extensions 6 | *.so 7 | 8 | # Distribution / packaging 9 | .Python 10 | env/ 11 | build/ 12 | develop-eggs/ 13 | dist/ 14 | downloads/ 15 | eggs/ 16 | lib/ 17 | lib64/ 18 | parts/ 19 | sdist/ 20 | var/ 21 | *.egg-info/ 22 | .installed.cfg 23 | *.egg 24 | 25 | # PyInstaller 26 | # Usually these files are written by a python script from a template 27 | # before PyInstaller builds the exe, so as to inject date/other infos into it. 28 | *.manifest 29 | *.spec 30 | 31 | # Installer logs 32 | pip-log.txt 33 | pip-delete-this-directory.txt 34 | 35 | # Unit test / coverage reports 36 | htmlcov/ 37 | .tox/ 38 | .coverage 39 | .cache 40 | nosetests.xml 41 | coverage.xml 42 | 43 | # Translations 44 | *.mo 45 | *.pot 46 | 47 | # Django stuff: 48 | *.log 49 | 50 | # Sphinx documentation 51 | docs/_build/ 52 | 53 | # PyBuilder 54 | target/ 55 | *.o 56 | -------------------------------------------------------------------------------- /.hgignore: -------------------------------------------------------------------------------- 1 | syntax: glob 2 | # Byte-compiled / optimized / DLL files 3 | __pycache__/ 4 | *.py[cod] 5 | 6 | # C extensions 7 | *.so 8 | 9 | # Distribution / packaging 10 | .Python 11 | env/ 12 | build/ 13 | develop-eggs/ 14 | dist/ 15 | downloads/ 16 | eggs/ 17 | lib/ 18 | lib64/ 19 | parts/ 20 | sdist/ 21 | var/ 22 | *.egg-info/ 23 | .installed.cfg 24 | *.egg 25 | 26 | # PyInstaller 27 | # Usually these files are written by a python script from a template 28 | # before PyInstaller builds the exe, so as to inject date/other infos into it. 29 | *.manifest 30 | *.spec 31 | 32 | # Installer logs 33 | pip-log.txt 34 | pip-delete-this-directory.txt 35 | 36 | # Unit test / coverage reports 37 | htmlcov/ 38 | .tox/ 39 | .coverage 40 | .cache 41 | nosetests.xml 42 | coverage.xml 43 | 44 | # Translations 45 | *.mo 46 | *.pot 47 | 48 | # Django stuff: 49 | *.log 50 | 51 | # Sphinx documentation 52 | docs/_build/ 53 | 54 | # PyBuilder 55 | target/ 56 | -------------------------------------------------------------------------------- /.hgtags: -------------------------------------------------------------------------------- 1 | efc5610fe89985511415054a330b63cbe7759254 0.1 2 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 1 | language: python 2 | language: c 3 | env: 4 | - PYTHON=python PYSUF='' PYVER=2.7 5 | - PYTHON=python3 PYSUF='3' PYVER=3.2 6 | install: 7 | - sudo apt-get update 8 | - sudo apt-get install $PYTHON-dev 9 | - sudo apt-get install $PYTHON-setuptools 10 | - sudo apt-get install $PYTHON-numpy 11 | - sudo easy_install$PYSUF pip 12 | - sudo pip install cython 13 | - sudo pip install pytest 14 | - sudo $PYTHON setup.py install 15 | - sudo $PYTHON setup.py sdist 16 | - sudo pip install dist/*.tar.gz 17 | script: 18 | - py.test 19 | -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include *.txt *.rst *.py 2 | recursive-include cec2013lsgo *.rst *.py *.cpp *.c *.h *.pyx 3 | -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- 1 | Introduction 2 | ============ 3 | This is a Python wrapping using the C++ Implementation of the test suite for the Special Session on Large Scale Global Optimization at 2013 IEEE Congress on Evolutionary Computation. 4 | 5 | 6 | Note 7 | ---- 8 | If you are to use any part of this code, please cite the following publications: 9 | X. Li, K. Tang, M. Omidvar, Z. Yang and K. Qin, "Benchmark Functions for the CEC'2013 Special Session and Competition on Large Scale Global Optimization," Technical Report, Evolutionary Computation and Machine Learning Group, RMIT University, Australia, 2013. 10 | http://goanna.cs.rmit.edu.au/~xiaodong/cec13-lsgo/competition/ 11 | 12 | Requirements 13 | ------------ 14 | - GNU Make 15 | - GNU G++ 16 | - Python 17 | - Cython 18 | 19 | Testing Environment 20 | ------------------- 21 | - Debian GNU/Linux jessie/sid 22 | - GNU Make 3.81 23 | - g++ (Debian 4.7.3-4) 4.7.3 24 | - Python 2.7 and Python 3.2 25 | - numpy 1.8.1 26 | - cython 0.20.1 27 | 28 | Results with Travis-CI 29 | ~~~~~~~~~~~~~~~~~~~~~~ 30 | .. image:: https://api.travis-ci.org/dmolina/cec2013lsgo.svg?branch=master 31 | 32 | Instalation 33 | ----------- 34 | 35 | Very easy, *pip install cec2013lsgo* ;-). 36 | 37 | You can also download from https://github.com/dmolina/cec2013lsgo, and do *python setup.py install [--user]*. 38 | (the option *--user* is for installing the package locally, as a normal user (interesting when you want to 39 | run the experiments in a cluster/server without administration permissions). 40 | 41 | To compile the source code in C++ 42 | ---------------------------------- 43 | 44 | The source code in C++ is also available. If you want to compile only the C++ 45 | version type in 'make' in the root directory of source code. 46 | 47 | There are two equivalents demo executables: demo and demo2. 48 | 49 | **REMEMBER: To run the C++ version the directory cdatafiles must be available in the working directory**. 50 | In the python version, these files are included in the packages, so it is not needed. 51 | 52 | Tests 53 | ----- 54 | 55 | The source code has tests to check the information about each function, and the results obtained 56 | with the C version using the solution np.zeros(1000) (a solution of zeros). 57 | 58 | Quickstart 59 | ---------- 60 | 61 | The package is very simple to use. There is a class Benchmark with two functions: 62 | 63 | - Give information for each function: their optimum, their dimensionality, the domain search, and the 64 | expected threshold to achieve the optima. 65 | 66 | - Give a fitness function to evaluate solutions. It expect that these solutions are numpy arrays 67 | (vectors) but it can also work with normal arrays. 68 | 69 | These two functionalities are done with two methods in Benchmark class: 70 | 71 | - **get_num_functions()** 72 | 73 | Return the number of functions in the benchmarks (15) 74 | 75 | - **get_info(function_id)** 76 | 77 | Return an array with the following information, where /function_id/ is the identifier of the function, a int value between 1 and 15. 78 | 79 | - lower, upper 80 | *lower* and *upper* boundaries of the domain search. 81 | 82 | - best 83 | Optimum to achieve, it is always zero, thus it can be ignored. 84 | 85 | - threshold 86 | Threshold to obtain, it is always zero, thus it can also be ignored. 87 | 88 | - dimension 89 | Dimension for the function, it is always 1000. 90 | 91 | It can be noticed that several data are the same for all functions. It is made for maintaining the 92 | same interface to other cec20xx competitions. 93 | 94 | - **get_function(function_id)** 95 | 96 | *function_id* is the same parameter than in **get_info**, an integer value between 1 and 15. 97 | 98 | It returns the fitness function to evaluate the solutions. 99 | 100 | Examples of use 101 | --------------- 102 | 103 | Obtain information about one function 104 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 | 106 | >>> from cec2013lsgo.cec2013 import Benchmark 107 | >>> bench = Benchmark() 108 | >>> bench.get_info(1) 109 | {'best': 0.0, 110 | 'dimension': 1000, 111 | 'lower': -100.0, 112 | 'threshold': 0, 113 | 'upper': 100.0} 114 | 115 | Create random solution for the search 116 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 | 118 | >>> from numpy.random import rand 119 | >>> info = bench.get_info(1) 120 | >>> dim = info['dimension'] 121 | >>> sol = info['lower']+rand(dim)*(info['upper']-info['lower']) 122 | 123 | Evaluate a solution 124 | ~~~~~~~~~~~~~~~~~~~ 125 | >>> fun_fitness = bench.get_function(1) 126 | >>> fun_fitness(sol) 127 | 464006824710.75995 128 | 129 | Contact 130 | ------- 131 | Python package and C++ version 132 | Daniel Molina @ Computer Science Deparment, University of Granada 133 | Please feel free to contact me at for any enquiries or suggestions. 134 | 135 | Last Updated: 136 | 137 | - C++ version 138 | <2018-12-10> 139 | 140 | - Python wrapping 141 | <2018-01-08> 142 | -------------------------------------------------------------------------------- /cec2013lsgo/Benchmarks.h: -------------------------------------------------------------------------------- 1 | #ifndef _BENCHMARKS_H 2 | #define _BENCHMARKS_H 3 | 4 | #include 5 | #include 6 | #include 7 | #include 8 | #include 9 | #include 10 | #include 11 | #include 12 | #include 13 | using namespace std; 14 | 15 | #define PI (3.141592653589793238462643383279) 16 | #define E (2.718281828459045235360287471352) 17 | #define L(i) ((int64_t)i) 18 | #define D(i) ((double)i) 19 | 20 | struct IndexMap{ 21 | unsigned arrIndex1; 22 | unsigned arrIndex2; 23 | }; 24 | 25 | class Benchmarks{ 26 | private: 27 | void save_best(); 28 | protected: 29 | // maxevals 30 | unsigned maxevals; 31 | // current number of evaluations 32 | unsigned numevals; 33 | // Current milestones to store 34 | unsigned *milestones; 35 | // Index of next milestone to check 36 | unsigned mil_pos; 37 | // Current found best fitness 38 | double best_fitness; 39 | // Filename 40 | string output; 41 | // Update the state with the new fitness 42 | void update(double newfitness); 43 | // Save in the file the current best 44 | void save_error(void); 45 | public: 46 | // Set the filename 47 | void set_file_output(const char *name); 48 | // Next iteration 49 | void nextRun(); 50 | protected: 51 | int next(int bits); 52 | int nextInt(int n); 53 | double nextDouble(); 54 | double nextGaussian(); 55 | unsigned ID; 56 | double* createShiftVector(int dim, double min,double max); 57 | int* createPermVector(int dim); 58 | double** createRotMatrix(int dim); 59 | double* createRotMatrix1D(int dim); 60 | double** createMultiRotateMatrix1D(int dim, int num); 61 | 62 | /* double* lookupprepare(int dim); */ 63 | 64 | // Basic mathematical functions' declaration 65 | double* multiply(double*vector, double*matrix,int dim); 66 | double* multiply(double*vector, double**matrix,int dim); 67 | double elliptic(double*x,int dim); 68 | /* double elliptic_new(double*x,int dim); */ 69 | /* double elliptic(double*x, int dim, int k); */ 70 | double rastrigin(double*x,int dim); 71 | double rastrigin(double *x, int dim, int k); 72 | double ackley(double*x,int dim); 73 | double ackley(double*x,int dim, int k); 74 | /* double rot_elliptic(double*x,int dim); */ 75 | /* double rot_elliptic(double*x,int dim, int k); */ 76 | double rot_rastrigin(double*x,int dim); 77 | double rot_rastrigin(double *x,int dim,int k); 78 | double rot_ackley(double*x,int dim); 79 | double rot_ackley(double*x,int dim,int k); 80 | double schwefel(double*x,int dim); 81 | double schwefel(double*x,int dim, int k); 82 | double sphere(double*x,int dim); 83 | double sphere(double*x,int dim, int k); 84 | double rosenbrock(double*x,int dim); 85 | double rosenbrock(double*x,int dim, int k); 86 | unsigned convertMatrixToArrayIndex ( unsigned i, unsigned j ); 87 | void createIndexMapping ( ); 88 | /* void extractElemByPerm(); */ 89 | double* rotateVector(int i, int &c); 90 | double* rotateVectorConform(int i, int &c); 91 | double* rotateVectorConflict(int i, int &c, double* x); 92 | 93 | int64_t M; 94 | int64_t A; 95 | int64_t m_seed; 96 | int64_t MASK; 97 | double m_nextGaussian; 98 | bool m_havenextGaussian; 99 | bool setOvectorToZero; 100 | 101 | int s_size; 102 | int overlap; 103 | double *Ovector; 104 | double **OvectorVec; 105 | int* Pvector; 106 | double* RotMatrix; 107 | double** MultiRotMatrix1D; 108 | /* double *lookup; */ 109 | /* double *lookup2; */ 110 | 111 | double* anotherz; 112 | double* anotherz1; 113 | double* anotherz2; 114 | 115 | vector interArray; 116 | 117 | // running time setting for benchmarks 118 | int minX; 119 | int maxX; 120 | int dimension; 121 | int nonSeparableGroupSize; 122 | int64_t functionInitRandomSeed; 123 | struct IndexMap *indexMap; 124 | unsigned arrSize; 125 | 126 | double** r25; 127 | double** r50; 128 | double** r100; 129 | int* s; 130 | double* w; 131 | 132 | // Added input file 133 | string data_dir; 134 | 135 | public: 136 | Benchmarks(); 137 | void set_data_dir(string new_data_dir); 138 | virtual ~Benchmarks(); 139 | virtual double compute(double* x){return 0;}; 140 | virtual double compute(vector x){return 0;}; 141 | 142 | int getMinX(); 143 | int getMaxX(); 144 | unsigned getID(); 145 | 146 | void setMinX(int); 147 | void setMaxX(int); 148 | void setSeed(int64_t); 149 | void setDimension(int); 150 | void setNonSeparableGroupSize(int); 151 | vector getInterArray ( ); 152 | void ArrToMat ( unsigned I1, unsigned I2, unsigned &matIndex ); 153 | void MatToArr ( unsigned &I1, unsigned &I2, unsigned matIndex ); 154 | 155 | /* for CEC2013SS */ 156 | double* readOvector(); 157 | double** readOvectorVec(); 158 | int* readPermVector(); 159 | double** readR(int sub_dim); 160 | int* readS(int num); 161 | double* readW(int num); 162 | 163 | void transform_osz(double* z, int dim); 164 | void transform_asy(double* z, double beta, int dim); 165 | void Lambda(double* z, double alpha, int dim); 166 | int sign(double x); 167 | double hat(double x); 168 | double c1(double x); 169 | double c2(double x); 170 | 171 | }; 172 | 173 | #endif 174 | -------------------------------------------------------------------------------- /cec2013lsgo/F1.cpp: -------------------------------------------------------------------------------- 1 | #include "F1.h" 2 | 3 | F1::F1():Benchmarks(){ 4 | Ovector = NULL; 5 | minX = -100; 6 | maxX = 100; 7 | ID = 1; 8 | anotherz = new double[dimension]; 9 | } 10 | 11 | F1::~F1(){ 12 | delete[] Ovector; 13 | delete[] anotherz; 14 | // (Ovector); 15 | } 16 | 17 | double F1::compute(double* x) { 18 | double result; 19 | int i; 20 | 21 | if(Ovector == NULL) { 22 | // Ovector = createShiftVector(dimension,minX,maxX); 23 | Ovector = readOvector(); 24 | } 25 | 26 | for(i = dimension - 1; i >= 0; i--) { 27 | anotherz[i] = x[i] - Ovector[i]; 28 | } 29 | 30 | // T_{OSZ} 31 | // transform_osz(anotherz,dimension); 32 | // result = elliptic(anotherz,dimension); 33 | result = elliptic(anotherz,dimension); 34 | update(result); 35 | return(result); 36 | } 37 | 38 | // double F1::compute(vector x){ 39 | // double result; 40 | // int i; 41 | 42 | // if(Ovector == NULL) { 43 | // Ovector = createShiftVector(dimension,minX,maxX); 44 | // } 45 | 46 | // for(i = dimension - 1; i >= 0; i--) { 47 | // anotherz[i] = x[i] - Ovector[i]; 48 | // } 49 | 50 | // result = elliptic(anotherz,dimension); 51 | // return(result); 52 | // } 53 | -------------------------------------------------------------------------------- /cec2013lsgo/F1.h: -------------------------------------------------------------------------------- 1 | #ifndef _F1_H 2 | #define _F1_H 3 | 4 | #include "Benchmarks.h" 5 | 6 | class F1:public Benchmarks{ 7 | public: 8 | F1(); 9 | double compute(double* x) ; 10 | /* double compute(vector x) ; */ 11 | ~F1(); 12 | }; 13 | #endif 14 | -------------------------------------------------------------------------------- /cec2013lsgo/F10.cpp: -------------------------------------------------------------------------------- 1 | #include "F10.h" 2 | #include 3 | 4 | 5 | F10::F10():Benchmarks(){ 6 | Ovector = NULL; 7 | minX = -5; 8 | maxX = 5; 9 | ID = 10; 10 | s_size = 20; 11 | anotherz = new double[dimension]; 12 | } 13 | 14 | F10::~F10(){ 15 | delete[] Ovector; 16 | delete[] Pvector; 17 | 18 | delete[] anotherz; 19 | for (int i = 0; i < 25; ++i) 20 | { 21 | delete[] r25[i]; 22 | } 23 | for (int i = 0; i < 50; ++i) 24 | { 25 | delete[] r50[i]; 26 | } 27 | for (int i = 0; i < 100; ++i) 28 | { 29 | delete[] r100[i]; 30 | } 31 | delete[] r25; 32 | delete[] r50; 33 | delete[] r100; 34 | delete[] s; 35 | delete[] w; 36 | 37 | } 38 | 39 | double F10::compute(double*x){ 40 | int i; 41 | double result=0.0; 42 | 43 | if(Ovector==NULL) 44 | { 45 | Ovector = readOvector(); 46 | Pvector = readPermVector(); 47 | r25 = readR(25); 48 | r50 = readR(50); 49 | r100 = readR(100); 50 | s = readS(s_size); 51 | w = readW(s_size); 52 | } 53 | for(i=0;i 3 | 4 | F11::F11():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -32; 7 | maxX = 32; 8 | ID = 11; 9 | s_size=20; 10 | anotherz = new double[dimension]; 11 | } 12 | 13 | F11::~F11(){ 14 | delete[] Ovector; 15 | delete[] Pvector; 16 | 17 | delete[] anotherz; 18 | for (int i = 0; i < 25; ++i) 19 | { 20 | delete[] r25[i]; 21 | } 22 | for (int i = 0; i < 50; ++i) 23 | { 24 | delete[] r50[i]; 25 | } 26 | for (int i = 0; i < 100; ++i) 27 | { 28 | delete[] r100[i]; 29 | } 30 | delete[] r25; 31 | delete[] r50; 32 | delete[] r100; 33 | delete[] s; 34 | delete[] w; 35 | } 36 | 37 | double F11::compute(double*x){ 38 | int i; 39 | double result=0.0; 40 | 41 | if(Ovector==NULL) 42 | { 43 | Ovector = readOvector(); 44 | Pvector = readPermVector(); 45 | r25 = readR(25); 46 | r50 = readR(50); 47 | r100 = readR(100); 48 | s = readS(s_size); 49 | w = readW(s_size); 50 | } 51 | 52 | for(i=0;i 3 | 4 | F12::F12():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 12; 9 | anotherz = new double[dimension]; 10 | } 11 | 12 | F12::~F12(){ 13 | delete[] Ovector; 14 | delete[] anotherz; 15 | } 16 | 17 | double F12::compute(double*x){ 18 | int i; 19 | double result=0.0; 20 | 21 | if(Ovector==NULL) 22 | { 23 | Ovector = readOvector(); 24 | } 25 | 26 | for(i=0;i 3 | 4 | F13::F13():Benchmarks(){ 5 | m_havenextGaussian=0; 6 | Ovector = NULL; 7 | minX = -100; 8 | maxX = 100; 9 | ID = 13; 10 | s_size = 20; 11 | dimension = 905; // because of overlapping 12 | overlap = 5; 13 | anotherz = new double[dimension]; 14 | } 15 | 16 | F13::~F13(){ 17 | delete[] Ovector; 18 | delete[] Pvector; 19 | delete[] anotherz; 20 | for (int i = 0; i < 25; ++i) 21 | { 22 | delete[] r25[i]; 23 | } 24 | for (int i = 0; i < 50; ++i) 25 | { 26 | delete[] r50[i]; 27 | } 28 | for (int i = 0; i < 100; ++i) 29 | { 30 | delete[] r100[i]; 31 | } 32 | delete[] r25; 33 | delete[] r50; 34 | delete[] r100; 35 | delete[] s; 36 | delete[] w; 37 | 38 | } 39 | 40 | double F13::compute(double*x){ 41 | int i; 42 | double result=0.0; 43 | 44 | if(Ovector==NULL) 45 | { 46 | Ovector = readOvector(); 47 | Pvector = readPermVector(); 48 | r25 = readR(25); 49 | r50 = readR(50); 50 | r100 = readR(100); 51 | s = readS(s_size); 52 | w = readW(s_size); 53 | } 54 | 55 | for(i=0;i 3 | 4 | F14::F14():Benchmarks(){ 5 | OvectorVec = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 14; 9 | s_size = 20; 10 | dimension = 905; // because of overlapping 11 | overlap = 5; 12 | } 13 | 14 | F14::~F14(){ 15 | for (int i = 0; i < s_size; i++) 16 | { 17 | free(OvectorVec[i]); 18 | } 19 | free(OvectorVec); 20 | 21 | delete[] Pvector; 22 | for (int i = 0; i < 25; ++i) 23 | { 24 | delete[] r25[i]; 25 | } 26 | for (int i = 0; i < 50; ++i) 27 | { 28 | delete[] r50[i]; 29 | } 30 | for (int i = 0; i < 100; ++i) 31 | { 32 | delete[] r100[i]; 33 | } 34 | delete[] r25; 35 | delete[] r50; 36 | delete[] r100; 37 | delete[] s; 38 | delete[] w; 39 | 40 | } 41 | 42 | double F14::compute(double*x){ 43 | int i; 44 | double result=0.0; 45 | 46 | if(OvectorVec == NULL) 47 | { 48 | s = readS(s_size); 49 | OvectorVec = readOvectorVec(); 50 | // // inspect OvectorVec 51 | // for (int i = 0; i < s_size; ++i) 52 | // { 53 | // for (int j=0; j< s[i]; j++) 54 | // { 55 | // printf("%.1f\t",OvectorVec[i][j]); 56 | // } 57 | // printf("\n"); 58 | // } 59 | Pvector = readPermVector(); 60 | r25 = readR(25); 61 | r50 = readR(50); 62 | r100 = readR(100); 63 | w = readW(s_size); 64 | } 65 | 66 | // s_size non-separable part with rotation 67 | int c = 0; 68 | for (i = 0; i < s_size; i++) 69 | { 70 | // cout<<"c="< 3 | 4 | F15::F15():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 15; 9 | anotherz = new double[dimension]; 10 | } 11 | 12 | F15::~F15(){ 13 | delete[] Ovector; 14 | delete[] anotherz; 15 | } 16 | 17 | double F15::compute(double*x){ 18 | int i; 19 | double result=0.0; 20 | 21 | if(Ovector==NULL) 22 | { 23 | Ovector = readOvector(); 24 | } 25 | 26 | for(i=0;i x) ; */ 14 | ~F2(); 15 | }; 16 | #endif 17 | -------------------------------------------------------------------------------- /cec2013lsgo/F3.cpp: -------------------------------------------------------------------------------- 1 | #include "F3.h" 2 | 3 | /** 4 | * Shifted Ackley's Function 5 | * 6 | * as defined in "Benchmark Functions for the CEC'2010 Special Session 7 | * and Competition on Large-Scale Global Optimization" by Ke Tang, 8 | * Xiaodong Li, P. N. Suganthan, Zhenyu Yang, and Thomas Weise 9 | * published as technical report on January 8, 2010 at Nature Inspired 10 | * Computation and Applications Laboratory (NICAL), School of Computer 11 | * Science and Technology, University of Science and Technology of China, 12 | * Hefei, Anhui, China. 13 | */ 14 | 15 | F3::F3():Benchmarks(){ 16 | Ovector = NULL; 17 | minX = -32; 18 | maxX = 32; 19 | ID = 3; 20 | anotherz = new double[dimension]; 21 | } 22 | 23 | F3::~F3(){ 24 | delete[] Ovector; 25 | delete[] anotherz; 26 | } 27 | 28 | 29 | double F3::compute(double*x){ 30 | int i; 31 | double result; 32 | 33 | if(Ovector == NULL) { 34 | // Ovector = createShiftVector(dimension,minX,maxX); 35 | Ovector = readOvector(); 36 | } 37 | 38 | for(i = dimension - 1; i >= 0; i--) { 39 | anotherz[i] = x[i] - Ovector[i]; 40 | } 41 | 42 | result = ackley(anotherz,dimension); 43 | 44 | update(result); 45 | return(result); 46 | } 47 | 48 | 49 | // double F3::compute(vector x){ 50 | // int i; 51 | // double result; 52 | 53 | // if(Ovector == NULL) { 54 | // Ovector = createShiftVector(dimension,minX,maxX); 55 | // } 56 | 57 | // for(i = dimension - 1; i >= 0; i--) { 58 | // anotherz[i] = x[i] - Ovector[i]; 59 | // } 60 | 61 | // result = ackley(anotherz,dimension); 62 | // return(result); 63 | // } 64 | -------------------------------------------------------------------------------- /cec2013lsgo/F3.h: -------------------------------------------------------------------------------- 1 | #ifndef _F3_H 2 | #define _F3_H 3 | 4 | #include "Benchmarks.h" 5 | 6 | 7 | class F3:public Benchmarks{ 8 | protected: 9 | 10 | public: 11 | F3(); 12 | double compute(double* x) ; 13 | /* double compute(vector x) ; */ 14 | ~F3(); 15 | }; 16 | #endif 17 | -------------------------------------------------------------------------------- /cec2013lsgo/F4.cpp: -------------------------------------------------------------------------------- 1 | #include "F4.h" 2 | #include 3 | 4 | F4::F4():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 4; 9 | s_size = 7; 10 | // lookup2 = lookupprepare(nonSeparableGroupSize); 11 | // lookup = lookupprepare(dimension - nonSeparableGroupSize); 12 | anotherz = new double[dimension]; 13 | } 14 | 15 | F4::~F4(){ 16 | delete[] Ovector; 17 | delete[] Pvector; 18 | delete[] anotherz; 19 | 20 | for (int i = 0; i < 25; ++i) 21 | { 22 | delete[] r25[i]; 23 | } 24 | for (int i = 0; i < 50; ++i) 25 | { 26 | delete[] r50[i]; 27 | } 28 | for (int i = 0; i < 100; ++i) 29 | { 30 | delete[] r100[i]; 31 | } 32 | delete[] r25; 33 | delete[] r50; 34 | delete[] r100; 35 | delete[] s; 36 | delete[] w; 37 | } 38 | 39 | double F4::compute(double*x){ 40 | int i; 41 | double result = 0.0; 42 | 43 | if(Ovector == NULL) { 44 | Ovector = readOvector(); 45 | Pvector = readPermVector(); 46 | r25 = readR(25); 47 | r50 = readR(50); 48 | r100 = readR(100); 49 | s = readS(s_size); 50 | w = readW(s_size); 51 | } 52 | 53 | for(i = 0; i < dimension; i++) { 54 | anotherz[i] = x[i] - Ovector[i]; 55 | } 56 | 57 | // for (int i = 0; i < dimension; ++i) 58 | // { 59 | // cout< x){ 99 | // int i; 100 | // double result = 0.0; 101 | 102 | // if(Ovector == NULL) { 103 | // Ovector = createShiftVector(dimension,minX,maxX); 104 | // /* 105 | // printf("\n\n\nO vector\n\n\n"); 106 | // for (i = 0; i x) ; */ 12 | ~F4(); 13 | }; 14 | 15 | #endif 16 | -------------------------------------------------------------------------------- /cec2013lsgo/F5.cpp: -------------------------------------------------------------------------------- 1 | #include "F5.h" 2 | #include 3 | 4 | 5 | 6 | F5::F5():Benchmarks(){ 7 | Ovector = NULL; 8 | minX = -5; 9 | maxX = 5; 10 | ID = 5; 11 | s_size = 7; 12 | anotherz = new double[dimension]; 13 | } 14 | 15 | F5::~F5(){ 16 | delete[] Ovector; 17 | delete[] Pvector; 18 | delete[] anotherz; 19 | 20 | for (int i = 0; i < 25; ++i) 21 | { 22 | delete[] r25[i]; 23 | } 24 | for (int i = 0; i < 50; ++i) 25 | { 26 | delete[] r50[i]; 27 | } 28 | for (int i = 0; i < 100; ++i) 29 | { 30 | delete[] r100[i]; 31 | } 32 | delete[] r25; 33 | delete[] r50; 34 | delete[] r100; 35 | delete[] s; 36 | delete[] w; 37 | 38 | } 39 | 40 | double F5::compute(double*x){ 41 | int i; 42 | double result = 0.0; 43 | 44 | if(Ovector == NULL) { 45 | Ovector = readOvector(); 46 | Pvector = readPermVector(); 47 | r25 = readR(25); 48 | r50 = readR(50); 49 | r100 = readR(100); 50 | s = readS(s_size); 51 | w = readW(s_size); 52 | } 53 | 54 | for(i = 0; i < dimension; i++) { 55 | anotherz[i] = x[i] - Ovector[i]; 56 | } 57 | 58 | // put them inside rastrigin function 59 | // // T_{osz} 60 | // transform_osz(anotherz, dimension); 61 | 62 | // // T_{asy}^{0.2} 63 | // transform_asy(anotherz, 0.2); 64 | 65 | // // lambda 66 | // Lambda(anotherz, 10); 67 | 68 | // s_size non-separable part with rotation 69 | int c = 0; 70 | for (i = 0; i < s_size; i++) 71 | { 72 | // cout<<"c="< x){ 101 | // int i; 102 | // double result = 0.0; 103 | 104 | // if(Ovector == NULL) { 105 | // Ovector = createShiftVector(dimension,minX,maxX); 106 | // Pvector = createPermVector(dimension); 107 | // RotMatrix = createRotMatrix1D(nonSeparableGroupSize); 108 | 109 | // /* 110 | // Pvector = new int[dimension]; 111 | // for (int i=0; i x) ; */ 12 | ~F5(); 13 | }; 14 | 15 | #endif 16 | -------------------------------------------------------------------------------- /cec2013lsgo/F6.cpp: -------------------------------------------------------------------------------- 1 | #include "F6.h" 2 | #include 3 | 4 | F6::F6():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -32; 7 | maxX = 32; 8 | ID = 6; 9 | s_size = 7; 10 | anotherz = new double[dimension]; 11 | } 12 | 13 | F6::~F6(){ 14 | delete[] Ovector; 15 | delete[] Pvector; 16 | delete[] anotherz; 17 | 18 | for (int i = 0; i < 25; ++i) 19 | { 20 | delete[] r25[i]; 21 | } 22 | for (int i = 0; i < 50; ++i) 23 | { 24 | delete[] r50[i]; 25 | } 26 | for (int i = 0; i < 100; ++i) 27 | { 28 | delete[] r100[i]; 29 | } 30 | delete[] r25; 31 | delete[] r50; 32 | delete[] r100; 33 | delete[] s; 34 | delete[] w; 35 | 36 | } 37 | 38 | double F6::compute(double*x){ 39 | int i; 40 | double result = 0.0; 41 | 42 | if(Ovector == NULL) { 43 | Ovector = readOvector(); 44 | Pvector = readPermVector(); 45 | r25 = readR(25); 46 | r50 = readR(50); 47 | r100 = readR(100); 48 | s = readS(s_size); 49 | w = readW(s_size); 50 | } 51 | 52 | for(i = 0; i < dimension; i++) { 53 | anotherz[i] = x[i] - Ovector[i]; 54 | } 55 | 56 | // cout<<"non"< 3 | 4 | 5 | F7::F7():Benchmarks(){ 6 | Ovector = NULL; 7 | minX = -100; 8 | maxX = 100; 9 | ID = 7; 10 | s_size = 7; 11 | anotherz = new double[dimension]; 12 | } 13 | 14 | F7::~F7(){ 15 | delete[] Ovector; 16 | delete[] Pvector; 17 | delete[] anotherz; for (int i = 0; i < 25; ++i) 18 | { 19 | delete[] r25[i]; 20 | } 21 | for (int i = 0; i < 50; ++i) 22 | { 23 | delete[] r50[i]; 24 | } 25 | for (int i = 0; i < 100; ++i) 26 | { 27 | delete[] r100[i]; 28 | } 29 | delete[] r25; 30 | delete[] r50; 31 | delete[] r100; 32 | delete[] s; 33 | delete[] w; 34 | 35 | } 36 | 37 | 38 | double F7::compute(double*x){ 39 | int i; 40 | double result = 0.0; 41 | 42 | if(Ovector == NULL) { 43 | Ovector = readOvector(); 44 | Pvector = readPermVector(); 45 | r25 = readR(25); 46 | r50 = readR(50); 47 | r100 = readR(100); 48 | s = readS(s_size); 49 | w = readW(s_size); 50 | } 51 | 52 | for(i = 0; i < dimension; i++) { 53 | anotherz[i] = x[i] - Ovector[i]; 54 | } 55 | 56 | // s_size non-separable part with rotation 57 | int c = 0; 58 | for (i = 0; i < s_size; i++) 59 | { 60 | // cout<<"c="< 3 | 4 | F8::F8():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 8; 9 | s_size = 20; 10 | anotherz = new double[dimension]; 11 | } 12 | 13 | F8::~F8(){ 14 | delete[] Ovector; 15 | delete[] Pvector; 16 | 17 | delete[] anotherz; 18 | for (int i = 0; i < 25; ++i) 19 | { 20 | delete[] r25[i]; 21 | } 22 | for (int i = 0; i < 50; ++i) 23 | { 24 | delete[] r50[i]; 25 | } 26 | for (int i = 0; i < 100; ++i) 27 | { 28 | delete[] r100[i]; 29 | } 30 | delete[] r25; 31 | delete[] r50; 32 | delete[] r100; 33 | delete[] s; 34 | delete[] w; 35 | } 36 | 37 | double F8::compute(double* x){ 38 | int i; 39 | double result=0.0; 40 | 41 | if(Ovector == NULL) { 42 | Ovector = readOvector(); 43 | Pvector = readPermVector(); 44 | r25 = readR(25); 45 | r50 = readR(50); 46 | r100 = readR(100); 47 | s = readS(s_size); 48 | w = readW(s_size); 49 | } 50 | 51 | for(i = 0; i < dimension; i++) { 52 | anotherz[i] = x[i] - Ovector[i]; 53 | } 54 | 55 | // s_size non-separable part with rotation 56 | int c = 0; 57 | for (i = 0; i < s_size; i++) 58 | { 59 | // cout<<"c="< 3 | 4 | F9::F9():Benchmarks(){ 5 | Ovector = NULL; 6 | minX = -100; 7 | maxX = 100; 8 | ID = 9; 9 | s_size = 20; 10 | anotherz = new double[dimension]; 11 | } 12 | 13 | F9::~F9(){ 14 | delete[] Ovector; 15 | delete[] Pvector; 16 | 17 | delete[] anotherz; 18 | for (int i = 0; i < 25; ++i) 19 | { 20 | delete[] r25[i]; 21 | } 22 | for (int i = 0; i < 50; ++i) 23 | { 24 | delete[] r50[i]; 25 | } 26 | for (int i = 0; i < 100; ++i) 27 | { 28 | delete[] r100[i]; 29 | } 30 | delete[] r25; 31 | delete[] r50; 32 | delete[] r100; 33 | delete[] s; 34 | delete[] w; 35 | 36 | } 37 | 38 | double F9::compute(double*x){ 39 | // int k, i; 40 | int i; 41 | double result=0.0; 42 | 43 | if(Ovector==NULL){ 44 | Ovector = readOvector(); 45 | Pvector = readPermVector(); 46 | r25 = readR(25); 47 | r50 = readR(50); 48 | r100 = readR(100); 49 | s = readS(s_size); 50 | w = readW(s_size); 51 | } 52 | 53 | for( i=0;i 6 | #include 7 | #include 8 | #include 9 | #include 10 | 11 | // benchmark set header files 12 | #include "F1.h" 13 | #include "F2.h" 14 | #include "F3.h" 15 | #include "F4.h" 16 | #include "F5.h" 17 | #include "F6.h" 18 | #include "F7.h" 19 | #include "F8.h" 20 | #include "F9.h" 21 | #include "F10.h" 22 | #include "F11.h" 23 | #include "F12.h" 24 | #include "F13.h" 25 | #include "F14.h" 26 | #include "F15.h" 27 | 28 | using namespace std; 29 | 30 | Benchmarks* generateFuncObj(int funcID); 31 | 32 | #endif 33 | -------------------------------------------------------------------------------- /cec2013lsgo/Makefile: -------------------------------------------------------------------------------- 1 | CC=g++ 2 | # CXXFLAGS=-Wall -pedantic -std=c++11 -O3 3 | CXXFLAGS=-Wall -pedantic -std=c++11 -O3 4 | 5 | OBJECTS=Benchmarks.o \ 6 | F1.o F2.o F3.o F4.o F5.o F6.o F7.o F8.o F9.o F10.o\ 7 | F11.o F12.o F13.o F14.o F15.o 8 | 9 | OBJECTS2=$(OBJECTS) eval_func.o 10 | 11 | default: demo demo2 12 | 13 | demo: $(OBJECTS) demo.o 14 | $(CC) $(CXXFLAGS) -o demo $(OBJECTS) demo.o 15 | 16 | demo2: $(OBJECTS2) demo2.o 17 | $(CC) $(CXXFLAGS) -o demo2 $(OBJECTS2) demo2.o 18 | 19 | demo.o: demo.cpp Header.h Benchmarks.h \ 20 | F1.h F2.h F3.h F4.h F5.h F6.h F7.h F8.h F9.h F10.h\ 21 | F11.h F12.h F13.h F14.h F15.h 22 | $(CC) $(CXXFLAGS) -c demo.cpp 23 | 24 | eval_func.o: eval_func.h Benchmarks.h \ 25 | F1.h F2.h F3.h F4.h F5.h F6.h F7.h F8.h F9.h F10.h\ 26 | F11.h F12.h F13.h F14.h F15.h 27 | $(CC) $(CXXFLAGS) -c eval_func.cpp 28 | 29 | demo2.o: demo2.cpp 30 | $(CC) $(CXXFLAGS) -c demo2.cpp 31 | 32 | Benchmarks.o: Benchmarks.h Benchmarks.cpp 33 | $(CC) $(CXXFLAGS) -c Benchmarks.cpp 34 | 35 | F1.o: F1.h Benchmarks.h F1.cpp 36 | $(CC) $(CXXFLAGS) -c F1.cpp 37 | 38 | F2.o: F2.h Benchmarks.h F2.cpp 39 | $(CC) $(CXXFLAGS) -c F2.cpp 40 | 41 | F3.o: F3.h Benchmarks.h F3.cpp 42 | $(CC) $(CXXFLAGS) -c F3.cpp 43 | 44 | F4.o: F4.h Benchmarks.h F4.cpp 45 | $(CC) $(CXXFLAGS) -c F4.cpp 46 | 47 | F5.o: F5.h Benchmarks.h F5.cpp 48 | $(CC) $(CXXFLAGS) -c F5.cpp 49 | 50 | F6.o: F6.h Benchmarks.h F6.cpp 51 | $(CC) $(CXXFLAGS) -c F6.cpp 52 | 53 | F7.o: F7.h Benchmarks.h F7.cpp 54 | $(CC) $(CXXFLAGS) -c F7.cpp 55 | 56 | F8.o: F8.h Benchmarks.h F8.cpp 57 | $(CC) $(CXXFLAGS) -c F8.cpp 58 | 59 | F9.o: F9.h Benchmarks.h F9.cpp 60 | $(CC) $(CXXFLAGS) -c F9.cpp 61 | 62 | F10.o: F10.h Benchmarks.h F10.cpp 63 | $(CC) $(CXXFLAGS) -c F10.cpp 64 | 65 | F11.o: F11.h Benchmarks.h F11.cpp 66 | $(CC) $(CXXFLAGS) -c F11.cpp 67 | 68 | F12.o: F12.h Benchmarks.h F12.cpp 69 | $(CC) $(CXXFLAGS) -c F12.cpp 70 | 71 | F13.o: F13.h Benchmarks.h F13.cpp 72 | $(CC) $(CXXFLAGS) -c F13.cpp 73 | 74 | F14.o: F14.h Benchmarks.h F14.cpp 75 | $(CC) $(CXXFLAGS) -c F14.cpp 76 | 77 | F15.o: F15.h Benchmarks.h F15.cpp 78 | $(CC) $(CXXFLAGS) -c F15.cpp 79 | 80 | .PHONY : clean 81 | clean: 82 | rm -f demo $(OBJECTS2) demo2.o demo.o 83 | -------------------------------------------------------------------------------- /cec2013lsgo/README.rst: -------------------------------------------------------------------------------- 1 | Introduction 2 | ============ 3 | C++ Implementation of the test suite for the Special Session on Large 4 | Scale Global Optimization at 2013 IEEE Congress on Evolutionary 5 | Computation. 6 | 7 | Note 8 | ---- 9 | If you are to use any part of this code, please cite the following publications: 10 | X. Li, K. Tang, M. Omidvar, Z. Yang and K. Qin, "Benchmark Functions for the CEC'2013 Special Session and Competition on Large Scale Global Optimization," Technical Report, Evolutionary Computation and Machine Learning Group, RMIT University, Australia, 2013. 11 | http://goanna.cs.rmit.edu.au/~xiaodong/cec13-lsgo/competition/ 12 | 13 | Requirements 14 | ------------ 15 | - GNU Make 16 | - GNU G++ 17 | 18 | Testing Environment 19 | ------------------- 20 | - Debian GNU/Linux jessie/sid 21 | - GNU Make 3.81 22 | - g++ (Debian 4.7.3-4) 4.7.3 23 | 24 | To compile 25 | ----------- 26 | type in 'make' in the root directory of source code 27 | 28 | To run 29 | ------ 30 | ./demo.out 31 | 32 | To clean up 33 | ----------- 34 | make clean 35 | 36 | Contact 37 | ------- 38 | Wenxiang Chen @ Computer Science Department, Colorado State University 39 | Please feel free to contact me at for any enquiries or suggestions. 40 | 41 | Last Updated: <2013-05-28 Tue 06:28> 42 | 43 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F10-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F10-w.txt: -------------------------------------------------------------------------------- 1 | 0.3127435060483861 2 | 15.12775129002843 3 | 2323.355051932917 4 | 0.0008059163159991055 5 | 11.42081047046656 6 | 3.554186402049341 7 | 29.98730853486525 8 | 0.99814770438828 9 | 1.615139127369899 10 | 1.512835249551407 11 | 0.6084813080072065 12 | 4464853.632306907 13 | 6.807672126970494e-05 14 | 0.1363174627449513 15 | 0.0007887145947891588 16 | 59885.12760160356 17 | 1.85232881407715 18 | 24.78342741548038 19 | 0.5431794716904831 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F11-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F11-w.txt: -------------------------------------------------------------------------------- 1 | 0.01613441050029006 2 | 0.1286113102576636 3 | 0.001204762698494153 4 | 0.3492354534770768 5 | 3.988703102369622 6 | 7.446972342274892 7 | 2.613875947071485 8 | 1.860151050804902e-05 9 | 0.07799241383970082 10 | 4946500.039233495 11 | 907.5677350872909 12 | 1245.438955040323 13 | 0.0001277872704005029 14 | 0.002545171687133515 15 | 0.01229630267562622 16 | 0.2253262515782924 17 | 16011.68013995448 18 | 4.152882294482328 19 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F13-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F13-w.txt: -------------------------------------------------------------------------------- 1 | 0.4353328319185867 2 | 0.009916326715665044 3 | 0.05427408462402158 4 | 29.36277114669338 5 | 11490.33037696204 6 | 24.12830828465555 7 | 3.451118275947202 8 | 2.326453155544301 9 | 0.001766789509539211 10 | 0.02539477160659147 11 | 19.9959220973553 12 | 0.0003668001927378567 13 | 0.001356048928320048 14 | 0.03874911849895608 15 | 88.89452353634552 16 | 57901.31382337087 17 | 0.008485316099078568 18 | 0.07362038148350014 19 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F14-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F14-w.txt: -------------------------------------------------------------------------------- 1 | 0.4753902976291743 2 | 498729.4349012464 3 | 328.1032851136715 4 | 0.3231599525017396 5 | 136.4562810151285 6 | 9.025518074644136 7 | 0.092439618796505 8 | 0.0001099484417540517 9 | 0.009366186525282616 10 | 299.6790409975172 11 | 4.939589864702469 12 | 81.36413957775696 13 | 0.6544027477491213 14 | 11.61197332124502 15 | 2860774.320110003 16 | 8.583578119678344e-05 17 | 23.56951753728851 18 | 0.04810314216448019 19 | 1.4318494811719 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F4-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 25 3 | 25 4 | 100 5 | 50 6 | 25 7 | 25 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F4-w.txt: -------------------------------------------------------------------------------- 1 | 45.69963061477328 2 | 1.564615888932325 3 | 18465.32344576193 4 | 0.01108949891829191 5 | 13.62598489888553 6 | 0.3015150617722511 7 | 59.6078373100912 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F5-R25.txt: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F5-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 25 3 | 25 4 | 100 5 | 50 6 | 25 7 | 25 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F5-w.txt: -------------------------------------------------------------------------------- 1 | 0.1807559981875739 2 | 9081.137957372908 3 | 24.27180711217444 4 | 1.86308808032975e-06 5 | 17698.08075760589 6 | 0.0002815181918094626 7 | 0.01525403796219806 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F6-R25.txt: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F6-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 25 3 | 25 4 | 100 5 | 50 6 | 25 7 | 25 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F6-w.txt: -------------------------------------------------------------------------------- 1 | 0.03527316509198532 2 | 5.315636074945294e-05 3 | 0.8707826395272957 4 | 49513.74201115565 5 | 0.08312474568178191 6 | 3.476438011305293e-05 7 | 282.2934975418022 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F7-R25.txt: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F7-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 25 3 | 25 4 | 100 5 | 50 6 | 25 7 | 25 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F7-w.txt: -------------------------------------------------------------------------------- 1 | 679.9025375867747 2 | 0.9321555273560842 3 | 2122.850158593588 4 | 0.5060110308419518 5 | 434.5961765462675 6 | 33389.62449652032 7 | 2.569238407592332 8 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F8-R25.txt: -------------------------------------------------------------------------------- 1 | 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2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F8-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F8-w.txt: -------------------------------------------------------------------------------- 1 | 4.630303898328862 2 | 0.6864279131323788 3 | 1143756360.088768 4 | 2.007758000992542 5 | 789.3671746186714 6 | 16.33320168691342 7 | 6.074996976773932 8 | 0.06466850615348552 9 | 0.07569676542592878 10 | 35.67259952037679 11 | 7.972550897120909e-06 12 | 10.78226361560055 13 | 4.199965822662956e-06 14 | 0.001923872337445647 15 | 0.001677064168931893 16 | 686.7975656834401 17 | 0.1571465735122922 18 | 0.04417781474359776 19 | 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-------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F9-p.txt: -------------------------------------------------------------------------------- 1 | 558,633,817,554,733,637,579,49,938,20,115,373,586,826,577,693,940,325,769,880,483,352,943,328,776,384,347,143,964,920,923,797,495,364,45,624,451,753,222,859,831,621,976,493,715,12,888,632,336,145,46,719,468,476,2,724,413,259,378,699,198,867,739,992,829,678,126,177,372,893,187,795,185,744,228,315,603,113,767,777,432,673,822,457,903,703,537,959,947,453,955,157,311,911,205,588,518,604,423,531,836,30,16,79,511,209,711,72,341,242,346,696,551,902,939,74,694,600,290,791,565,233,375,567,491,602,433,141,490,743,396,270,167,389,973,350,591,252,296,500,494,989,519,669,506,487,568,11,718,267,645,792,741,824,289,301,677,596,251,340,95,876,672,471,41,124,208,339,908,975,192,246,530,265,408,957,862,330,76,48,658,535,758,264,215,592,986,905,100,553,19,691,770,990,995,461,702,99,613,21,935,542,105,304,207,153,92,200,825,477,333,236,783,180,227,573,434,623,742,561,882,539,748,550,291,142,343,193,424,735,663,161,355,811,869,555,931,740,310,778,309,348,85,547,523,606,913,55,941,861,763,612,501,927,651,915,80,653,371,206,248,698,582,78,934,94,448,482,956,590,334,469,407,107,5,268,963,338,287,849,368,462,314,481,221,961,260,948,636,237,472,601,196,298,148,526,398,360,981,150,801,255,154,684,50,611,689,852,832,695,7,646,809,106,566,415,598,823,421,962,278,281,232,879,9,668,370,480,165,381,102,930,950,414,418,605,865,508,34,499,737,512,466,97,926,450,122,144,164,374,578,24,732,687,907,422,392,802,191,397,436,1000,112,937,690,534,887,675,269,560,319,454,773,803,53,203,807,705,884,323,891,297,921,430,515,985,889,589,404,616,349,969,478,59,536,321,327,210,854,390,219,631,833,970,111,885,58,721,35,538,752,525,183,929,685,293,682,173,110,363,890,644,813,960,214,498,463,147,489,139,635,886,444,155,225,473,821,312,295,108,543,63,75,686,608,479,280,449,266,804,900,874,738,380,235,257,201,175,521,928,664,460,557,425,137,169,912,458,665,760,574,784,361,25,641,790,243,10,982,445,855,442,218,828,18,572,96,475,736,549,93,181,282,932,427,657,130,766,66,585,277,626,583,65,27,133,514,262,67,868,459,810,814,830,533,840,818,101,581,279,505,316,447,294,529,443,625,638,353,486,991,850,14,507,409,968,517,31,43,764,395,544,464,467,492,838,391,674,400,725,785,120,376,656,402,958,659,439,204,576,977,68,326,419,388,465,765,666,82,630,17,132,513,798,916,455,358,135,524,881,897,746,417,942,121,860,303,247,313,993,787,619,231,28,226,701,706,971,618,710,546,580,629,292,793,114,168,806,643,342,816,273,300,84,781,966,570,756,176,749,356,847,667,318,362,949,456,878,548,224,166,15,470,771,774,502,726,125,4,387,620,163,757,474,275,946,335,32,564,44,299,660,952,609,768,254,628,750,722,197,864,676,128,617,320,683,520,936,844,584,3,895,367,917,639,174,845,234,195,54,974,634,984,98,812,23,171,229,587,38,717,179,679,307,189,997,720,485,337,306,516,552,61,484,73,671,239,158,238,230,933,440,81,136,211,283,509,799,86,199,149,385,253,541,42,109,190,775,906,116,761,837,452,435,410,528,172,688,8,90,394,972,134,22,883,152,386,655,820,366,545,103,713,170,263,819,965,322,258,647,284,274,896,901,954,305,29,216,987,615,71,607,83,527,56,194,412,904,510,202,978,89,213,745,842,697,40,841,104,922,827,562,138,57,709,186,805,184,951,780,925,429,680,848,815,160,496,39,379,6,650,245,704,244,324,755,967,276,556,754,716,988,217,354,87,731,751,399,117,839,369,843,871,359,727,782,64,563,532,654,240,796,712,569,162,331,91,559,522,648,919,383,910,60,851,914,980,131,393,762,272,13,979,437,406,382,999,37,728,271,898,365,924,249,223,140,401,877,808,261,857,332,88,159,642,661,759,599,627,788,308,730,220,858,640,540,614,127,571,329,983,188,250,26,953,909,256,789,288,446,866,652,918,52,241,779,593,681,863,786,504,345,872,403,351,118,835,488,892,662,595,129,33,597,714,441,723,503,729,873,856,692,772,426,36,77,846,416,944,62,317,594,438,800,670,431,996,994,285,649,119,1,405,69,47,182,123,411,707,357,377,151,286,212,575,610,853,734,497,700,834,899,156,428,945,894,420,178,344,870,146,302,794,70,708,51,747,622,875,998 2 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F9-s.txt: -------------------------------------------------------------------------------- 1 | 50 2 | 50 3 | 25 4 | 25 5 | 100 6 | 100 7 | 25 8 | 25 9 | 50 10 | 25 11 | 100 12 | 25 13 | 100 14 | 50 15 | 25 16 | 25 17 | 25 18 | 100 19 | 50 20 | 25 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cdatafiles/F9-w.txt: -------------------------------------------------------------------------------- 1 | 1756.996997333392 2 | 570.7338357630722 3 | 3.355970801461051 4 | 1.036411046690371 5 | 62822.29234664552 6 | 1.731558445257169 7 | 0.08980493862761418 8 | 0.0008071244581233227 9 | 1403745.636331398 10 | 8716.208361607407 11 | 0.003344616275362139 12 | 1.34951151390475 13 | 0.004776798216929033 14 | 5089.913308957042 15 | 12.66641964611824 16 | 0.0003588940639560592 17 | 0.2400156872122657 18 | 3.964353127212945 19 | 0.001428559155593465 20 | 0.005228218198001427 21 | -------------------------------------------------------------------------------- /cec2013lsgo/cec2013.pyx: -------------------------------------------------------------------------------- 1 | #!python 2 | #cython: language_level=2, boundscheck=False 3 | from os import path 4 | from collections import namedtuple 5 | from pkg_resources import resource_filename 6 | from libc.stdlib cimport malloc, free 7 | import cython 8 | 9 | cdef extern from "eval_func.h": 10 | void set_func(int funid) 11 | double eval_sol(double*) 12 | void set_data_dir(char * new_data_dir) 13 | void free_func() 14 | void next_run() 15 | 16 | 17 | import sys 18 | if sys.version < '3': 19 | def b(x): 20 | return x 21 | else: 22 | import codecs 23 | def b(x): 24 | return codecs.latin_1_encode(x)[0] 25 | 26 | def _cec2013_test_func(double[::1] x): 27 | cdef int dim 28 | cdef double fitness 29 | cdef double * sol 30 | 31 | dim = x.shape[0] 32 | 33 | sol = malloc(dim * cython.sizeof(double)) 34 | 35 | if sol is NULL: 36 | raise MemoryError() 37 | 38 | for i in xrange(dim): 39 | sol[i] = x[i] 40 | 41 | fitness = eval_sol(sol) 42 | free(sol) 43 | return fitness 44 | 45 | cdef class Benchmark: 46 | cpdef get_info(self, int fun): 47 | """ 48 | Return the lower bound of the function 49 | """ 50 | cdef double optimum 51 | cdef double range_fun 52 | 53 | optimum = 0 54 | 55 | if (fun in [2, 5, 9]): 56 | range_fun = 5 57 | elif (fun in [3, 6, 10]): 58 | range_fun = 32 59 | else: 60 | range_fun = 100 61 | 62 | return {'lower': -range_fun, 'upper': range_fun, 'threshold': 0, 63 | 'best': optimum, 'dimension': 1000} 64 | 65 | def get_num_functions(self): 66 | return 15 67 | 68 | def __dealloc(self): 69 | free_func() 70 | 71 | cpdef next_run(self): 72 | next_run() 73 | 74 | cpdef get_function(self, int fun): 75 | """ 76 | Evaluate the solution 77 | """ 78 | set_func(fun) 79 | cdef bytes dir_name = resource_filename("cec2013lsgo", "cdatafiles").encode() 80 | set_data_dir(dir_name) 81 | return _cec2013_test_func 82 | -------------------------------------------------------------------------------- /cec2013lsgo/demo.cpp: -------------------------------------------------------------------------------- 1 | #include "Header.h" 2 | #include 3 | #include 4 | #include 5 | 6 | int main(){ 7 | /* Test the basic benchmark function */ 8 | double* X; 9 | Benchmarks* fp=NULL; 10 | unsigned dim = 1000; 11 | unsigned funToRun[] = {1,2,3,4,5,6,7,8,9,10,11,12,13,14,15}; 12 | // unsigned funToRun[] = {1}; 13 | // unsigned funToRun[] = {15}; 14 | unsigned funNum = 15; 15 | unsigned run = 1; 16 | 17 | vector runTimeVec; 18 | struct timeval start, end; 19 | long seconds, useconds; 20 | double mtime; 21 | 22 | X = new double[dim]; 23 | for (unsigned i=0; inextRun(); 30 | printf("F %d value = %1.20E\n", fp->getID(), fp->compute(X)); 31 | gettimeofday(&start, NULL); 32 | for (unsigned j=0; j < run; j++){ 33 | fp->compute(X); 34 | } 35 | gettimeofday(&end, NULL); 36 | 37 | seconds = end.tv_sec - start.tv_sec; 38 | useconds = end.tv_usec - start.tv_usec; 39 | 40 | mtime = (((seconds) * 1000 + useconds/1000.0) + 0.5)/1000; 41 | 42 | runTimeVec.push_back(mtime); 43 | printf ( "F %d, Running Time = %f s\n\n", fp->getID(), mtime); 44 | 45 | delete fp; 46 | } 47 | 48 | delete []X; 49 | 50 | // for (unsigned i=0; i 3 | #include 4 | #include 5 | #include 6 | 7 | using std::vector; 8 | 9 | int main(){ 10 | /* Test the basic benchmark function */ 11 | double* X; 12 | unsigned dim = 1000; 13 | unsigned funToRun[] = {1,2,3,4,5,6,7,8,9,10,11,12,13,14,15}; 14 | // unsigned funToRun[] = {1}; 15 | // unsigned funToRun[] = {15}; 16 | unsigned funNum = 15; 17 | unsigned run = 1; 18 | 19 | vector runTimeVec; 20 | struct timeval start, end; 21 | long seconds, useconds; 22 | double mtime; 23 | 24 | X = new double[dim]; 25 | for (unsigned i=0; i 3 | 4 | static Benchmarks* bench=NULL; 5 | 6 | Benchmarks* generateFuncObj(int funcID); 7 | 8 | void set_func(int funcID) { 9 | bench = generateFuncObj(funcID); 10 | bench->nextRun(); 11 | } 12 | 13 | void next_run() { 14 | bench->nextRun(); 15 | } 16 | 17 | double eval_sol(double *x) { 18 | return bench->compute(x); 19 | } 20 | 21 | void set_data_dir(char *new_data_dir) { 22 | string data_dir = new_data_dir; 23 | bench->set_data_dir(data_dir); 24 | } 25 | 26 | void free_func(void) { 27 | if (bench) { 28 | delete bench; 29 | } 30 | 31 | bench = NULL; 32 | } 33 | 34 | // create new object of class with default setting 35 | Benchmarks* generateFuncObj(int funcID){ 36 | Benchmarks *fp; 37 | // run each of specified function in "configure.ini" 38 | if (funcID==1){ 39 | fp = new F1(); 40 | }else if (funcID==2){ 41 | fp = new F2(); 42 | }else if (funcID==3){ 43 | fp = new F3(); 44 | }else if (funcID==4){ 45 | fp = new F4(); 46 | }else if (funcID==5){ 47 | fp = new F5(); 48 | }else if (funcID==6){ 49 | fp = new F6(); 50 | }else if (funcID==7){ 51 | fp = new F7(); 52 | }else if (funcID==8){ 53 | fp = new F8(); 54 | }else if (funcID==9){ 55 | fp = new F9(); 56 | }else if (funcID==10){ 57 | fp = new F10(); 58 | }else if (funcID==11){ 59 | fp = new F11(); 60 | }else if (funcID==12){ 61 | fp = new F12(); 62 | }else if (funcID==13){ 63 | fp = new F13(); 64 | }else if (funcID==14){ 65 | fp = new F14(); 66 | }else if (funcID==15){ 67 | fp = new F15(); 68 | }else{ 69 | cerr<<"Fail to locate Specified Function Index"<=0 80 | # 81 | # end = time.time() 82 | # print "F%d: %.2f segs" %(fun_id,end-start) 83 | # 84 | # endglobal = time.time() 85 | # print "Total: %.2f segs" %(endglobal-startglobal) 86 | -------------------------------------------------------------------------------- /tox.ini: -------------------------------------------------------------------------------- 1 | # content of: tox.ini , put in same dir as setup.py 2 | [tox] 3 | envlist = py27 4 | [testenv] 5 | deps=numpy 6 | pytest 7 | Cython 8 | commands=py.test # or 'nosetests' or ... 9 | --------------------------------------------------------------------------------