├── .Rbuildignore ├── .bazeliskrc ├── .bazelrc ├── .bazelversion ├── .clang-format ├── .covrignore ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── config.yml │ └── feature_request.md └── workflows │ ├── bazel_build_linux.yml │ ├── bazel_test_mac.yml │ ├── check-standard.yaml │ ├── dependency-review.yml │ ├── pkgdown.yaml │ └── test-coverage.yaml ├── .gitignore ├── .lintr ├── BUILD.bazel ├── DESCRIPTION ├── LICENSE.md ├── MANIFEST.in ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── catch-routine-registration.R ├── class.R ├── data.R ├── fastcpd.R ├── utilities.R └── variance_estimation.R ├── README.Rmd ├── README.md ├── WORKSPACE ├── _pkgdown.yml ├── bazel ├── BUILD ├── README.md ├── external │ ├── BUILD │ ├── fmtlib.BUILD │ ├── opencl_windows.BUILD │ ├── pybind11.BUILD │ ├── python.BUILD │ └── spdlog.BUILD ├── external_deps.bzl ├── fastcpd_http_archive.bzl ├── get_python_libs.py ├── python │ ├── BUILD │ ├── BUILD.tpl │ ├── python.bzl │ ├── python_native.bzl │ └── variety.tpl ├── remote_config │ ├── BUILD │ └── common.bzl ├── repositories.bzl ├── repository_locations.bzl └── repository_locations_utils.bzl ├── bazelisk.py ├── cran-comments.md ├── data-raw ├── bitcoin.R ├── bitcoin.json ├── occupancy.R ├── occupancy.txt ├── transcriptome.R ├── transcriptome.RData ├── uk_seatbelts.R ├── well_log.R └── well_log.txt ├── data ├── bitcoin.rda ├── occupancy.rda ├── transcriptome.rda ├── uk_seatbelts.rda └── well_log.rda ├── inst ├── CITATION └── include │ ├── fastcpd_impl.h │ ├── ref_fastglm_fit_glm.h │ ├── ref_fastglm_fit_glm_dense.h │ ├── ref_fastglm_glm.h │ ├── ref_fastglm_glm_base.h │ └── ref_tseries.h ├── man ├── bitcoin.Rd ├── fastcpd-class.Rd ├── fastcpd.Rd ├── fastcpd_ar.Rd ├── fastcpd_arima.Rd ├── fastcpd_arma.Rd ├── fastcpd_binomial.Rd ├── fastcpd_family.Rd ├── fastcpd_garch.Rd ├── fastcpd_lasso.Rd ├── fastcpd_lm.Rd ├── fastcpd_mean.Rd ├── fastcpd_meanvariance.Rd ├── fastcpd_poisson.Rd ├── fastcpd_ts.Rd ├── fastcpd_var.Rd ├── fastcpd_variance.Rd ├── figures │ ├── README-ar3-1.png │ ├── README-time-comparison-large-1.png │ ├── README-time-comparison-small-1.png │ ├── cheatsheets.pdf │ ├── cheatsheets.png │ ├── logo.png │ └── logo.svg ├── occupancy.Rd ├── plot.Rd ├── print.Rd ├── show.Rd ├── summary.Rd ├── transcriptome.Rd ├── uk_seatbelts.Rd ├── variance_arma.Rd ├── variance_lm.Rd ├── variance_mean.Rd ├── variance_median.Rd └── well_log.Rd ├── mypy.ini ├── pdoc └── custom.css ├── pkgdown └── extra.scss ├── pyproject.toml ├── python ├── BUILD.bazel ├── __init__.py ├── py.typed ├── pybind.cc ├── segmentation.py └── variance_estimation.py ├── requirements.in ├── requirements_lock.txt ├── setup.py ├── shiny ├── app.R ├── lm.csv ├── server.R └── ui.R ├── src ├── .gitignore ├── BUILD.bazel ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── fastcpd.cc ├── fastcpd.h ├── fastcpd_impl.cc ├── ref_fastglm_fit_glm.cc ├── ref_fastglm_fit_glm_dense.cc ├── ref_r_family.c ├── ref_tseries.cc ├── ref_tseries_cfuncs.f90 ├── ref_tseries_dsumsl.f ├── ref_tseries_formats.c ├── ref_tseries_garch.c ├── test-fastcpd.cc └── test-runner.cc ├── tests ├── BUILD.bazel ├── test_fastcpd.py ├── testthat.R └── testthat │ ├── examples │ ├── data-bitcoin.txt │ ├── data-transcriptome.txt │ ├── data-uk_seatbelts.R │ ├── data-well_log-quantile.txt │ ├── data-well_log.R │ ├── fastcpd_1.R │ ├── fastcpd_2.R │ ├── fastcpd_3.txt │ ├── fastcpd_4.txt │ ├── fastcpd_ar_1.R │ ├── fastcpd_ar_2.R │ ├── fastcpd_arima.txt │ ├── fastcpd_arma.txt │ ├── fastcpd_binomial.R │ ├── fastcpd_garch.txt │ ├── fastcpd_lasso.txt │ ├── fastcpd_lm_1.R │ ├── fastcpd_lm_2.txt │ ├── fastcpd_mean_1.R │ ├── fastcpd_mean_2.R │ ├── fastcpd_meanvariance_1.R │ ├── fastcpd_meanvariance_2.R │ ├── fastcpd_poisson.txt │ ├── fastcpd_ts.txt │ ├── fastcpd_var.R │ ├── fastcpd_variance_1.R │ ├── fastcpd_variance_2.R │ ├── plot.R │ ├── variance_arma.R │ ├── variance_lm.R │ ├── variance_mean.R │ └── variance_median.R │ ├── test-check.R │ ├── test-cpp.R │ ├── test-examples-data-bitcoin.R │ ├── test-examples-data-transcriptome.R │ ├── test-examples-data-uk_seatbelts.R │ ├── test-examples-data-well_log-quantile.R │ ├── test-examples-data-well_log.R │ ├── test-examples-fastcpd_1.R │ ├── test-examples-fastcpd_2.R │ ├── test-examples-fastcpd_3.R │ ├── test-examples-fastcpd_4.R │ ├── test-examples-fastcpd_ar_1.R │ ├── test-examples-fastcpd_ar_2.R │ ├── test-examples-fastcpd_arima.R │ ├── test-examples-fastcpd_arma.R │ ├── test-examples-fastcpd_binomial.R │ ├── test-examples-fastcpd_garch.R │ ├── test-examples-fastcpd_lasso.R │ ├── test-examples-fastcpd_lm_1.R │ ├── test-examples-fastcpd_lm_2.R │ ├── test-examples-fastcpd_mean_1.R │ ├── test-examples-fastcpd_mean_2.R │ ├── test-examples-fastcpd_meanvariance_1.R │ ├── test-examples-fastcpd_meanvariance_2.R │ ├── test-examples-fastcpd_poisson.R │ ├── test-examples-fastcpd_ts.R │ ├── test-examples-fastcpd_var.R │ ├── test-examples-fastcpd_variance_1.R │ ├── test-examples-fastcpd_variance_2.R │ ├── test-examples-plot.R │ ├── test-examples-variance_arma.R │ ├── test-examples-variance_lm.R │ ├── test-examples-variance_mean.R │ ├── test-examples-variance_median.R │ ├── test-experiments.R │ ├── test-fastcpd-class.R │ ├── test-pvalue-distribution.R │ ├── test-vignettes-comparison-pelt-lasso.R │ ├── test-vignettes-comparison-pelt-logistic-regression.R │ └── test-vignettes-comparison-pelt-poisson-regression.R └── vignettes ├── comparison-packages.Rmd ├── comparison-packages.Rmd.original ├── comparison-packages ├── data-setup-ar3-1.png ├── data-setup-garch11-1.png ├── data-setup-lasso-1.png ├── data-setup-linear-regression-1.png ├── data-setup-logistic-regression-1.png ├── data-setup-multivariate-mean-and-or-variance-change-1.png ├── data-setup-multivariate-mean-change-1.png ├── data-setup-poisson-regression-1.png ├── data-setup-poisson-regression-2.png ├── data-setup-univariate-mean-and-or-variance-change-1.png ├── 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