├── LICENSE ├── PRETRAINED_EMULATORS.md ├── README.md ├── data ├── DATA_FORMAT_REQUIREMENTS.md ├── LeftVentricle │ ├── geometryData │ │ ├── augmented-node-features.npy │ │ ├── augmented-topology.npy │ │ ├── constitutive_law.py │ │ ├── edge-features.npy │ │ ├── elements.npy │ │ ├── fibre-field-elementwise.npy │ │ ├── interior-points.npy │ │ ├── kmeans-labels-list.npy │ │ ├── node-layer-labels.npy │ │ ├── pressure-surface-facets.npy │ │ ├── real-node-features.npy │ │ ├── real-node-topology.npy │ │ ├── reference-augmented-coords.npy │ │ ├── reference-coords.npy │ │ ├── sim_output.h5 │ │ ├── sim_output.xdmf │ │ └── sparse-topology.npy │ ├── normalisationStatistics │ │ ├── edge-features-mean.npy │ │ ├── edge-features-std.npy │ │ ├── node-features-mean.npy │ │ ├── node-features-std.npy │ │ ├── theta-mean.npy │ │ └── theta-std.npy │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── Liver │ ├── geometryData │ │ ├── augmented-node-features.npy │ │ ├── augmented-topology.npy │ │ ├── constitutive_law.py │ │ ├── edge-features.npy │ │ ├── elements.npy │ │ ├── interior-points.npy │ │ ├── kmeans-labels-list.npy │ │ ├── node-layer-labels.npy │ │ ├── real-node-topology.npy │ │ ├── reference-augmented-nodes.npy │ │ ├── reference-coords.npy │ │ ├── sim_output.h5 │ │ ├── sim_output.xdmf │ │ └── sparse-topology.npy │ ├── normalisationStatistics │ │ ├── augmented-node-features-mean.npy │ │ ├── augmented-node-features-std.npy │ │ ├── edge-features-mean.npy │ │ ├── edge-features-std.npy │ │ ├── global-features-mean.npy │ │ ├── global-features-std.npy │ │ ├── real-node-displacement-mean.npy │ │ ├── real-node-displacement-std.npy │ │ ├── theta-mean.npy │ │ └── theta-std.npy │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── OnceClampedBeam │ ├── geometryData │ │ ├── augmented-node-features.npy │ │ ├── augmented-topology.npy │ │ ├── constitutive_law.py │ │ ├── edge-features.npy │ │ ├── elements.npy │ │ ├── interior-points.npy │ │ ├── kmeans-labels-list.npy │ │ ├── node-layer-labels.npy │ │ ├── real-node-features.npy │ │ ├── real-node-topology.npy │ │ ├── reference-augmented-coords.npy │ │ ├── reference-coords.npy │ │ └── sparse-topology.npy │ ├── normalisationStatistics │ │ ├── edge-features-mean.npy │ │ ├── edge-features-std.npy │ │ ├── node-features-mean.npy │ │ ├── node-features-std.npy │ │ ├── theta-mean.npy │ │ └── theta-std.npy │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── README.md ├── TwiceClampedBeam │ ├── geometryData │ │ ├── augmented-node-features.npy │ │ ├── augmented-topology.npy │ │ ├── constitutive_law.py │ │ ├── edge-features.npy │ │ ├── elements.npy │ │ ├── interior-points.npy │ │ ├── kmeans-labels-list.npy │ │ ├── node-layer-labels.npy │ │ ├── real-node-features.npy │ │ ├── real-node-topology.npy │ │ ├── reference-augmented-coords.npy │ │ ├── reference-coords.npy │ │ └── sparse-topology.npy │ ├── normalisationStatistics │ │ ├── edge-features-mean.npy │ │ ├── edge-features-std.npy │ │ ├── node-features-mean.npy │ │ └── node-features-std.npy │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── TwistingBeam │ ├── geometryData │ │ ├── augmented-node-features.npy │ │ ├── augmented-topology.npy │ │ ├── constitutive_law.py │ │ ├── disp-add.npy │ │ ├── edge-features.npy │ │ ├── elements.npy │ │ ├── interior-points.npy │ │ ├── kmeans-labels-list.npy │ │ ├── node-layer-labels.npy │ │ ├── real-node-features.npy │ │ ├── real-node-topology.npy │ │ ├── reference-augmented-coords.npy │ │ ├── reference-coords.npy │ │ ├── sim_output.h5 │ │ ├── sim_output.xdmf │ │ └── sparse-topology.npy │ ├── normalisationStatistics │ │ ├── edge-features-mean.npy │ │ ├── edge-features-std.npy │ │ ├── node-features-mean.npy │ │ ├── node-features-std.npy │ │ ├── theta-mean.npy │ │ └── theta-std.npy │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── TwistingBeamUnprocessed │ ├── geometryData │ │ ├── constitutive_law.py │ │ ├── disp-add.npy │ │ ├── elements.npy │ │ ├── interior-points.npy │ │ ├── real-node-features.npy │ │ ├── real-node-topology.npy │ │ ├── reference-coords.npy │ │ ├── sim_output.h5 │ │ └── sim_output.xdmf │ └── simulationData │ │ └── test │ │ ├── displacement.npy │ │ ├── pe-values.npy │ │ └── theta.npy ├── data_main.py ├── data_process_utils.py ├── fenicsMeshProcessing │ ├── .ipynb_checkpoints │ │ └── FenicsMeshProcessingLV-checkpoint.ipynb │ ├── FenicsMeshProcessingLV.ipynb │ ├── fibre_dir.xml │ ├── lvgmsh_fmaker.xml │ ├── lvgmsh_mesh.xml │ └── results │ │ ├── .npy │ │ ├── elements.npy │ │ ├── fibre-field-elementwise.npy │ │ ├── interior-points.npy │ │ ├── pressure-surface-facets.npy │ │ ├── real-node-topology.npy │ │ └── reference-coords.npy └── fenicsSimulationCode │ ├── LV_data │ ├── fibre_dir.xml │ ├── gmsh2dolfin.py │ ├── lvgmsh_fmaker.xml │ ├── lvgmsh_mesh.xml │ ├── mesh.h5 │ ├── mesh.xdmf │ ├── normal_dir.xml │ └── sheet_dir.xml │ ├── LeftVentricle.ipynb │ └── OnceClampedBeam.ipynb ├── emulationResults └── trainedParameters │ ├── LeftVentricle │ └── trainedNetworkParams.pkl │ ├── Liver │ └── trainedNetworkParams.pkl │ └── TwistingBeam │ └── trainedNetworkParams.pkl ├── images └── LeftVentricleResultsPlot.png ├── main.py ├── models.py ├── utils.py ├── utils_data.py ├── utils_evaluation.py ├── utils_potential_energy.py ├── utils_training.py └── utils_visualisation.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dodaltuin/soft-tissue-pignn/HEAD/LICENSE -------------------------------------------------------------------------------- /PRETRAINED_EMULATORS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dodaltuin/soft-tissue-pignn/HEAD/PRETRAINED_EMULATORS.md 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