├── .Rbuildignore ├── .gitattributes ├── .github └── workflows │ ├── build.yml │ ├── rhub.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── BGGM-package.R ├── RcppExports.R ├── bggm_missing.R ├── bma_posterior.R ├── coef.estimate.R ├── confirm.R ├── constrained_post.R ├── convergence.R ├── datasets.R ├── estimate.R ├── explore.default.R ├── fisher_r2z.R ├── fisher_z2r.R ├── gen_ordinal.R ├── gen_pcors.R ├── ggm_compare_bf.default.R ├── ggm_compare_confirm.R ├── ggm_compare_estimate.default.R ├── ggm_compare_ppc.default.R ├── ggm_search.R ├── helpers.R ├── map.R ├── mvn_imputation.R ├── pcor_2_cor.BGGM.R ├── pcor_mat.R ├── plot.select.R ├── plot_prior.R ├── posterior_predict.R ├── posterior_samples.R ├── posterior_sum.R ├── precision.R ├── pred_prob.R ├── predict.estimate.R ├── predictability.R ├── print_BGGM.R ├── prior_belief_ggm.R ├── prior_belief_var.R ├── regression_summary.R ├── roll_your_own.R ├── select.VAR_estimate.R ├── select.estimate.R ├── select.explore.R ├── select.ggm_compare_bf.R ├── select.ggm_compare_estimate.R ├── var_estimate.R ├── weighted_adj_mat.R └── zero_order.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── cleanup ├── configure ├── configure.ac ├── cran-comments.md ├── data-raw ├── bfi_data.R ├── csws_data.R ├── ptsd_cor1.R ├── ptsd_cor2.R ├── ptsd_cor3.R ├── ptsd_cor4.R └── ptsd_data.R ├── data ├── Sachs.rda ├── asd_ocd.rda ├── bfi.rda ├── csws.rda ├── depression_anxiety_t1.rda ├── depression_anxiety_t2.rda ├── gss.rda ├── ifit.rda ├── iri.rda ├── ptsd.csv ├── ptsd.rda ├── ptsd_cor1.csv ├── ptsd_cor1.rda ├── ptsd_cor2.rda ├── ptsd_cor3.rda ├── ptsd_cor4.rda ├── rsa.rda ├── tas.rda └── women_math.rda ├── docs ├── 404.html ├── LICENSE-text.html ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── control.html │ ├── hyp_3_ways.html │ ├── in_tandem.html │ ├── index.html │ ├── mcmc_diagnostics.html │ ├── netplot.html │ ├── netstat_custom.html │ ├── ppc_custom.html │ ├── ppc_custom_files │ │ └── figure-html │ │ │ ├── unnamed-chunk-13-1.png │ │ │ ├── unnamed-chunk-18-1.png │ │ │ ├── unnamed-chunk-23-1.png │ │ │ ├── unnamed-chunk-28-1.png │ │ │ └── unnamed-chunk-8-1.png │ ├── predictability.html │ ├── test_sum.html │ └── var_model.html ├── authors.html ├── deps │ ├── bootstrap-5.3.1 │ │ ├── bootstrap.bundle.min.js │ │ ├── bootstrap.bundle.min.js.map │ │ ├── bootstrap.min.css │ │ ├── font.css │ │ └── fonts │ │ │ ├── 07d40e985ad7c747025dabb9f22142c4.woff2 │ │ │ ├── 1Ptug8zYS_SKggPNyC0ITw.woff2 │ │ │ ├── 1Ptug8zYS_SKggPNyCAIT5lu.woff2 │ │ │ ├── 1Ptug8zYS_SKggPNyCIIT5lu.woff2 │ │ │ ├── 1Ptug8zYS_SKggPNyCMIT5lu.woff2 │ │ │ ├── 1Ptug8zYS_SKggPNyCkIT5lu.woff2 │ │ │ ├── 1f5e011d6aae0d98fc0518e1a303e99a.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKcQ72j00.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKcg72j00.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKcw72j00.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKew72j00.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKfA72j00.woff2 │ │ │ ├── 4iCs6KVjbNBYlgoKfw72.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjs2yNL4U.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjsGyN.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjtGyNL4U.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjvGyNL4U.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjvWyNL4U.woff2 │ │ │ ├── 4iCv6KVjbNBYlgoCxCvjvmyNL4U.woff2 │ │ │ ├── 626330658504e338ee86aec8e957426b.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7jsDJT9g.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7ksDJT9g.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDI.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7osDJT9g.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7psDJT9g.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7qsDJT9g.woff2 │ │ │ ├── 6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7rsDJT9g.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qN67lqDY.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qNK7lqDY.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qNa7lqDY.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qNq7lqDY.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qO67lqDY.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7l.woff2 │ │ │ ├── 6xK3dSBYKcSV-LCoeQqfX1RYOo3qPK7lqDY.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwkxduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwlBduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwlxdu.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmBduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmRduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmhduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3i54rwmxduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwkxduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlBduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdu.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmBduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmRduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmhduz8A.woff2 │ │ │ ├── 6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwmxduz8A.woff2 │ │ │ ├── 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│ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlMOvWjMY.woff2 │ │ │ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlMevWjMY.woff2 │ │ │ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlMuvWjMY.woff2 │ │ │ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlOevWjMY.woff2 │ │ │ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlPevW.woff2 │ │ │ ├── HI_SiYsKILxRpg3hIP6sJ7fM7PqlPuvWjMY.woff2 │ │ │ ├── JTUSjIg1_i6t8kCHKm459W1hyzbi.woff2 │ │ │ ├── JTUSjIg1_i6t8kCHKm459WRhyzbi.woff2 │ │ │ ├── JTUSjIg1_i6t8kCHKm459WZhyzbi.woff2 │ │ │ ├── JTUSjIg1_i6t8kCHKm459Wdhyzbi.woff2 │ │ │ ├── JTUSjIg1_i6t8kCHKm459Wlhyw.woff2 │ │ │ ├── QGYpz_kZZAGCONcK2A4bGOj8mNhN.woff2 │ │ │ ├── S6u8w4BMUTPHjxsAUi-qJCY.woff2 │ │ │ ├── S6u8w4BMUTPHjxsAXC-q.woff2 │ │ │ ├── S6u9w4BMUTPHh6UVSwaPGR_p.woff2 │ │ │ ├── S6u9w4BMUTPHh6UVSwiPGQ.woff2 │ │ │ ├── S6u9w4BMUTPHh7USSwaPGR_p.woff2 │ │ │ ├── S6u9w4BMUTPHh7USSwiPGQ.woff2 │ │ │ ├── S6uyw4BMUTPHjx4wXg.woff2 │ │ │ ├── S6uyw4BMUTPHjxAwXjeu.woff2 │ │ │ ├── XRXV3I6Li01BKofIMeaBXso.woff2 │ │ │ ├── XRXV3I6Li01BKofINeaB.woff2 │ │ │ ├── XRXV3I6Li01BKofIO-aBXso.woff2 │ │ │ ├── XRXV3I6Li01BKofIOOaBXso.woff2 │ │ │ ├── XRXV3I6Li01BKofIOuaBXso.woff2 │ │ │ ├── c2f002b3a87d3f9bfeebb23d32cfd9f8.woff2 │ │ │ ├── ee91700cdbf7ce16c054c2bb8946c736.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqW106F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWt06F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtE6F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtU6F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWtk6F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWu06F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWuU6F.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWuk6F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWvU6F15M.woff2 │ │ │ ├── memtYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWqWxU6F15M.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTS-muw.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTS2mu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSCmu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSGmu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSKmu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSOmu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSumu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTSymu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTUGmu1aB.woff2 │ │ │ ├── memvYaGs126MiZpBA-UvWbX2vVnXBbObj2OVTVOmu1aB.woff2 │ │ │ ├── q5uGsou0JOdh94bfuQltOxU.woff2 │ │ │ └── q5uGsou0JOdh94bfvQlt.woff2 │ ├── bootstrap-toc-1.0.1 │ │ └── bootstrap-toc.min.js │ ├── clipboard.js-2.0.11 │ │ └── clipboard.min.js │ ├── data-deps.txt │ ├── font-awesome-6.4.2 │ │ ├── css │ │ │ ├── all.css │ │ │ ├── all.min.css │ │ │ ├── v4-shims.css │ │ │ └── v4-shims.min.css │ │ └── webfonts │ │ │ ├── fa-brands-400.ttf │ │ │ ├── fa-brands-400.woff2 │ │ │ ├── fa-regular-400.ttf │ │ │ ├── fa-regular-400.woff2 │ │ │ ├── fa-solid-900.ttf │ │ │ ├── fa-solid-900.woff2 │ │ │ ├── fa-v4compatibility.ttf │ │ │ └── fa-v4compatibility.woff2 │ ├── font-awesome-6.5.2 │ │ ├── css │ │ │ ├── all.css │ │ │ ├── all.min.css │ │ │ ├── v4-shims.css │ │ │ └── v4-shims.min.css │ │ └── webfonts │ │ │ ├── fa-brands-400.ttf │ │ │ ├── fa-brands-400.woff2 │ │ │ ├── fa-regular-400.ttf │ │ │ ├── fa-regular-400.woff2 │ │ │ ├── fa-solid-900.ttf │ │ │ ├── fa-solid-900.woff2 │ │ │ ├── fa-v4compatibility.ttf │ │ │ └── fa-v4compatibility.woff2 │ ├── headroom-0.11.0 │ │ ├── headroom.min.js │ │ └── jQuery.headroom.min.js │ ├── jquery-3.6.0 │ │ ├── jquery-3.6.0.js │ │ ├── jquery-3.6.0.min.js │ │ └── jquery-3.6.0.min.map │ └── search-1.0.0 │ │ ├── autocomplete.jquery.min.js │ │ ├── fuse.min.js │ │ └── mark.min.js ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── index.html ├── katex-auto.js ├── lightswitch.js ├── link.svg ├── logo.png ├── news │ └── index.html ├── paper.html ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── BGGM-package.html │ ├── Rplot001.png │ ├── Rplot002.png │ ├── Sachs.html │ ├── _PACKAGE.html │ ├── asd_ocd.html │ ├── bfi.html │ ├── bggm_missing-1.png │ ├── bggm_missing.html │ ├── bma_posterior.html │ ├── coef.estimate.html │ ├── coef.explore.html │ ├── confirm.html │ ├── constrained_posterior.html │ ├── convergence.html │ ├── csws.html │ ├── depression_anxiety_t1.html │ ├── depression_anxiety_t2.html │ ├── estimate.html │ ├── explore-1.png │ ├── explore.html │ ├── figures │ │ ├── acf.png │ │ ├── acf_new.png │ │ ├── acf_new2.png │ │ ├── acf_problem.png │ │ ├── binary_r2_error.png │ │ ├── binary_r2_ridge.png │ │ ├── est_net.png │ │ ├── hyp_3ways_hist.png │ │ ├── hyp_3ways_pie.png │ │ ├── hyp_3ways_ppc.png │ │ ├── hyp_plot.png │ │ ├── index_hist.png │ │ ├── index_summ.png │ │ ├── logo.png │ │ ├── netplot_1.png │ │ ├── netplot_2.png │ │ ├── netplot_3.png │ │ ├── netplot_index.png │ │ ├── netstat_assort.png │ │ ├── netstat_bridge.png │ │ ├── netstat_ridge.png │ │ ├── ordinal_r2_error.png │ │ ├── test_sum_hist.png │ │ ├── trace.png │ │ ├── var_coef.png │ │ └── var_ridgeline.png │ ├── fisher_r_to_z.html │ ├── fisher_z_to_r.html │ ├── gen_net.html │ ├── gen_ordinal.html │ ├── ggm_compare_confirm.html │ ├── ggm_compare_estimate.html │ ├── ggm_compare_explore.html │ ├── ggm_compare_ppc.html │ ├── ggm_search.html │ ├── gss.html │ ├── ifit.html │ ├── impute_data.html │ ├── index.html │ ├── iri.html │ ├── map.html │ ├── pcor_mat.html │ ├── pcor_sum-1.png │ ├── pcor_sum.html │ ├── pcor_to_cor.html │ ├── plot.confirm-1.png │ ├── plot.confirm.html │ ├── plot.ggm_compare_ppc-1.png │ ├── plot.ggm_compare_ppc-2.png │ ├── plot.ggm_compare_ppc.html │ ├── plot.pcor_sum.html │ ├── plot.predictability-1.png │ ├── plot.predictability.html │ ├── plot.roll_your_own-1.png │ ├── plot.roll_your_own.html │ ├── plot.select.html │ ├── plot.summary.estimate-1.png │ ├── plot.summary.estimate.html │ ├── plot.summary.explore-1.png │ ├── plot.summary.explore.html │ ├── plot.summary.ggm_compare_estimate-1.png │ ├── plot.summary.ggm_compare_estimate.html │ ├── plot.summary.ggm_compare_explore-1.png │ ├── plot.summary.ggm_compare_explore.html │ ├── plot.summary.select.explore-1.png │ ├── plot.summary.select.explore.html │ ├── plot.summary.var_estimate-1.png │ ├── plot.summary.var_estimate.html │ ├── plot_prior-1.png │ ├── plot_prior.html │ ├── posterior_predict.html │ ├── posterior_samples-1.png │ ├── posterior_samples.html │ ├── precision.html │ ├── predict.estimate.html │ ├── predict.explore.html │ ├── predict.var_estimate.html │ ├── predictability.html │ ├── predicted_probability.html │ ├── print.BGGM.html │ ├── prior_belief_ggm.html │ ├── prior_belief_var.html │ ├── ptsd.html │ ├── ptsd_cor1.html │ ├── ptsd_cor2.html │ ├── ptsd_cor3.html │ ├── ptsd_cor4.html │ ├── regression_summary.html │ ├── roll_your_own.html │ ├── rsa.html │ ├── select.estimate.html │ ├── select.explore.html │ ├── select.ggm_compare_estimate.html │ ├── select.ggm_compare_explore.html │ ├── select.html │ ├── select.var_estimate.html │ ├── summary.coef.html │ ├── summary.estimate.html │ ├── summary.explore.html │ ├── summary.ggm_compare_estimate.html │ ├── summary.ggm_compare_explore.html │ ├── summary.predictability.html │ ├── summary.select.explore.html │ ├── summary.var_estimate.html │ ├── tas.html │ ├── var_estimate.html │ ├── weighted_adj_mat.html │ ├── women_math.html │ └── zero_order_cors.html ├── search.json └── sitemap.xml ├── index.Rmd ├── index.md ├── inst ├── CITATION └── REFERENCES.bib ├── man ├── BGGM-package.Rd ├── Sachs.Rd ├── asd_ocd.Rd ├── bfi.Rd ├── bggm_missing.Rd ├── bma_posterior.Rd ├── coef.estimate.Rd ├── coef.explore.Rd ├── confirm.Rd ├── constrained_posterior.Rd ├── convergence.Rd ├── csws.Rd ├── depression_anxiety_t1.Rd ├── depression_anxiety_t2.Rd ├── estimate.Rd ├── explore.Rd ├── figures │ ├── acf.png │ ├── acf_new.png │ ├── acf_new2.png │ ├── acf_problem.png │ ├── binary_r2_error.png │ ├── binary_r2_ridge.png │ ├── est_net.png │ ├── hyp_3ways_hist.png │ ├── hyp_3ways_pie.png │ ├── hyp_3ways_ppc.png │ ├── hyp_plot.png │ ├── index_hist.png │ ├── index_summ.png │ ├── logo.png │ ├── netplot_1.png │ ├── netplot_2.png │ ├── netplot_3.png │ ├── netplot_index.png │ ├── netstat_assort.png │ ├── netstat_bridge.png │ ├── netstat_ridge.png │ ├── ordinal_r2_error.png │ ├── test_sum_hist.png │ ├── trace.png │ ├── var_coef.png │ └── var_ridgeline.png ├── fisher_r_to_z.Rd ├── fisher_z_to_r.Rd ├── gen_net.Rd ├── gen_ordinal.Rd ├── ggm_compare_confirm.Rd ├── ggm_compare_estimate.Rd ├── ggm_compare_explore.Rd ├── ggm_compare_ppc.Rd ├── ggm_search.Rd ├── gss.Rd ├── ifit.Rd ├── impute_data.Rd ├── iri.Rd ├── map.Rd ├── pcor_mat.Rd ├── pcor_sum.Rd ├── pcor_to_cor.Rd ├── plot.confirm.Rd ├── plot.ggm_compare_ppc.Rd ├── plot.pcor_sum.Rd ├── plot.predictability.Rd ├── plot.roll_your_own.Rd ├── plot.select.Rd ├── plot.summary.estimate.Rd ├── plot.summary.explore.Rd ├── plot.summary.ggm_compare_estimate.Rd ├── plot.summary.ggm_compare_explore.Rd ├── plot.summary.select.explore.Rd ├── plot.summary.var_estimate.Rd ├── plot_prior.Rd ├── posterior_predict.Rd ├── posterior_samples.Rd ├── precision.Rd ├── predict.estimate.Rd ├── predict.explore.Rd ├── predict.var_estimate.Rd ├── predictability.Rd ├── predicted_probability.Rd ├── print.BGGM.Rd ├── prior_belief_ggm.Rd ├── prior_belief_var.Rd ├── ptsd.Rd ├── ptsd_cor1.Rd ├── ptsd_cor2.Rd ├── ptsd_cor3.Rd ├── ptsd_cor4.Rd ├── regression_summary.Rd ├── roll_your_own.Rd ├── rsa.Rd ├── select.Rd ├── select.estimate.Rd ├── select.explore.Rd ├── select.ggm_compare_estimate.Rd ├── select.ggm_compare_explore.Rd ├── select.var_estimate.Rd ├── summary.coef.Rd ├── summary.estimate.Rd ├── summary.explore.Rd ├── summary.ggm_compare_estimate.Rd ├── summary.ggm_compare_explore.Rd ├── summary.predictability.Rd ├── summary.select.explore.Rd ├── summary.var_estimate.Rd ├── tas.Rd ├── var_estimate.Rd ├── weighted_adj_mat.Rd ├── women_math.Rd └── zero_order_cors.Rd ├── paper.md ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── readme_models ├── binary_cors.rda ├── bridge.png ├── confirm_hyp.png ├── fit_explore.rda ├── fit_ggm_compare_confirm.rda ├── fit_hyp1.rda ├── fit_mvn_ordinal.rda ├── fit_plt_ex.rda ├── fit_ppc1.rda ├── fit_sample.rda ├── ggm_compare_estimate.png ├── global_hd.rda ├── hex.jpg ├── mv_probit.rda ├── obs.rda ├── pcor_ex.rda ├── plt_est_net.png ├── plt_ggm_compare_explore.png ├── plt_net_example.png ├── ppc_1.png └── predictability.png ├── src ├── Makevars.in ├── Makevars.win ├── RcppExports.cpp └── bggm_fast.cpp ├── tests ├── testthat.R └── testthat │ ├── test-bggm_missing.R │ ├── test-bma_posterior.R │ ├── test-estimate.R │ ├── test-select.explore.R │ └── test-summary.estimate.R └── vignettes ├── .gitignore ├── control.Rmd ├── hyp_3_ways.Rmd ├── in_tandem.Rmd ├── mcmc_diagnostics.Rmd ├── 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