├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── ConsensusTADs.R ├── DiffPlot.R ├── GM12878.40kb.raw.chr2.R ├── IMR90.40kb.raw.chr2.R ├── TADCompare.R ├── TimeCompare.R ├── data.R ├── rao_chr22_prim.R ├── rao_chr22_rep.R └── time_mats.R ├── README.md ├── data ├── GM12878.40kb.raw.chr2.rda ├── IMR90.40kb.raw.chr2.rda ├── rao_chr22_prim.rda ├── rao_chr22_rep.rda └── time_mats.rda ├── inst └── CITATION ├── man ├── ConsensusTADs.Rd ├── DiffPlot.Rd ├── GM12878.40kb.raw.chr2.Rd ├── IMR90.40kb.raw.chr2.Rd ├── TADCompare.Rd ├── TimeCompare.Rd ├── rao_chr22_prim.Rd ├── rao_chr22_rep.Rd └── time_mats.Rd └── vignettes ├── .gitignore ├── Input_Data.Rmd ├── Ontology_Analysis.Rmd ├── TADCompare.Rmd └── pack_ref.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dozmorovlab/TADCompare/HEAD/.Rbuildignore 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