├── .gitignore ├── LICENSE ├── README.md ├── data ├── Lib1-1_E4.5.csv ├── Lib1-2_E4.5.csv ├── Lib1-3_E3.5.csv ├── Lib1-4_E3.5.csv └── e35_e45_layout.p ├── notebooks └── Harmony_sample_notebook.ipynb ├── setup.py └── src └── harmony ├── __init__.py ├── core.py ├── plot.py ├── utils.py └── version.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/README.md -------------------------------------------------------------------------------- /data/Lib1-1_E4.5.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/data/Lib1-1_E4.5.csv -------------------------------------------------------------------------------- /data/Lib1-2_E4.5.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/data/Lib1-2_E4.5.csv -------------------------------------------------------------------------------- /data/Lib1-3_E3.5.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/data/Lib1-3_E3.5.csv -------------------------------------------------------------------------------- /data/Lib1-4_E3.5.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/data/Lib1-4_E3.5.csv -------------------------------------------------------------------------------- /data/e35_e45_layout.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/data/e35_e45_layout.p -------------------------------------------------------------------------------- /notebooks/Harmony_sample_notebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/notebooks/Harmony_sample_notebook.ipynb -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/setup.py -------------------------------------------------------------------------------- /src/harmony/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/src/harmony/__init__.py -------------------------------------------------------------------------------- /src/harmony/core.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/src/harmony/core.py -------------------------------------------------------------------------------- /src/harmony/plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/src/harmony/plot.py -------------------------------------------------------------------------------- /src/harmony/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpeerlab/Harmony/HEAD/src/harmony/utils.py -------------------------------------------------------------------------------- /src/harmony/version.py: -------------------------------------------------------------------------------- 1 | __version__ = "0.1.6" 2 | --------------------------------------------------------------------------------