├── .github └── workflows │ └── python-app.yml ├── .gitignore ├── .vscode └── launch.json ├── LICENSE ├── README.md ├── examples ├── data │ ├── RB_genes_human.txt │ └── filtered_gene_bc_matrices │ │ └── hg19 │ │ ├── barcodes.tsv │ │ ├── genes.tsv │ │ └── matrix.mtx ├── example-using-random-data-points.ipynb └── tutorial_pbmc3k.ipynb ├── phenograph ├── __init__.py ├── bruteforce_nn.py ├── classify.py ├── cluster.py ├── core.py ├── louvain │ ├── community │ ├── community.exe │ ├── convert │ ├── convert.exe │ ├── hierarchy │ ├── hierarchy.exe │ ├── linux-community │ ├── linux-convert │ ├── linux-hierarchy │ ├── louvain-readme.txt │ └── phenograph-readme.txt └── version.py ├── requirements.txt ├── setup.py └── tests ├── __init__.py ├── conftest.py ├── test_classify.py ├── test_cluster.py └── test_core.py /.github/workflows/python-app.yml: -------------------------------------------------------------------------------- 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