├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── DefinePaths.R ├── DeterminePeakDepths.R ├── RcppExports.R ├── alignBowtie.R ├── binmaker.R ├── calcDepths.R ├── calcDistBias.R ├── calcDistance.R ├── calcP.R ├── callpeaks.R ├── checkRequired.R ├── combineputativepairs.R ├── extendpeaks.R ├── findScore.R ├── groupPairs.R ├── makecombos.R ├── model_chia.R └── plotdistancedistribution.R ├── README.rst ├── argfile.txt ├── man ├── alignBowtie.Rd └── findScore.Rd ├── mango.R ├── mango.Rproj └── src ├── RcppExports.cpp ├── mangoC.cpp └── mergesort.h /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dphansti/mango/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dphansti/mango/HEAD/.gitignore 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