├── .azure-pipelines └── test-template.yml ├── .gitignore ├── BBM_Specification.md ├── CHANGELOG.md ├── LICENSE ├── MBias.c ├── Makefile ├── MethylDackel.h ├── MethylDackelLogo.png ├── README.md ├── azure-pipeline.yml ├── bed.c ├── common.c ├── example_OT.svg ├── extract.c ├── main.c ├── mergeContext.c ├── overlaps.c ├── perRead.c ├── svg.c └── tests ├── NH.bam ├── NH.bam.bai ├── cg100.fa ├── cg_R1.fq ├── cg_R2.fq ├── cg_aln.bam ├── cg_aln.bam.bai ├── cg_with_variants.bam ├── cg_with_variants.bam.bai ├── chgchh.fa ├── chgchh_aln.bam ├── chgchh_aln.bam.bai ├── ct100.fa ├── ct_R1.fq ├── ct_R2.fq ├── ct_aln.bam ├── ct_aln.bam.bai └── test.py /.azure-pipelines/test-template.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dpryan79/MethylDackel/HEAD/.azure-pipelines/test-template.yml -------------------------------------------------------------------------------- /.gitignore: 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