├── LICENSE.txt ├── README.md ├── data ├── commondata_model1.mat ├── commondata_model2.mat └── commondata_model3.mat ├── figs ├── model1.fig ├── model1.pdf ├── model1MCMCse.fig ├── model1MCMCse.pdf ├── model1_mcmcJAGS_infer_chains.fig ├── model1_mcmcJAGS_infer_chains.pdf ├── model1_mcmc_infer_chains.fig ├── model1mcmc.fig ├── model1mcmcConvergence.fig ├── model1mcmcConvergence.pdf ├── model1mcmcCustom.fig ├── model1mcmcCustom.pdf ├── model1mcmcJAGS.fig ├── model1mcmcJAGS.pdf ├── model1mcmc_rapid_convergence.pdf ├── model2.fig ├── model2.pdf ├── model2_infer_chains.fig ├── model2_infer_chains.pdf ├── model2autocorrelations.fig ├── model2autocorrelations.pdf ├── model2paramMatrix.fig ├── model2paramMatrix.pdf ├── model2psychometric.fig ├── model3.fig ├── model3.pdf ├── model3_infer_chains.fig ├── model3autocorrelations.fig ├── model3psychometric.fig ├── model3psychometric.pdf ├── param_estimation.fig ├── param_estimation.pdf ├── psychometric_funcs.fig ├── psychometric_funcs.pdf └── testAFCplot.pdf ├── funcs ├── .ipynb_checkpoints │ └── fig2AfcDiagram-checkpoint.ipynb ├── ColorBand │ ├── ColorBand.m │ └── license.txt ├── HDIofGrid.m ├── acf │ ├── acf.m │ └── license.txt ├── bensPlotFunctions │ ├── MCMCdiagnoticsPlot.m │ ├── addDistributionSummaryText.m │ ├── add_text_to_figure.m │ ├── bens2Dmarginalplot.m │ ├── hline.m │ ├── log_plot_with_background.m │ ├── myDensityMatrix.m │ ├── my_2d_hist.m │ ├── my_errorbarsUL.m │ ├── my_shaded_errorbar_zone_UL.m │ ├── plotChainAutocorrelationsModel2.m │ ├── plotPost.m │ └── plot_formatting_setup.m ├── bensUtils │ ├── argmax.m │ ├── min_sec.m │ └── vec.m ├── define_experiment_params.m ├── define_mcmcparams.m ├── export_fig │ ├── .gitignore │ ├── LICENSE │ ├── README.md │ ├── append_pdfs.m │ ├── copyfig.m │ ├── eps2pdf.m │ ├── export_fig.m │ ├── fix_lines.m │ ├── ghostscript.m │ ├── im2gif.m │ ├── isolate_axes.m │ ├── pdf2eps.m │ ├── pdftops.m │ ├── print2array.m │ ├── print2eps.m │ ├── user_string.m │ └── using_hg2.m ├── generate_common_data.m ├── latex_fig │ ├── latex_fig.m │ └── license.txt ├── m1InferGridApprox.m ├── m1generateJAGS.m ├── m1inferJAGS.m ├── m1jointPosterior.m ├── m1posteriorPrediction.m ├── makeExplanatoryFigures │ ├── fig2AfcDiagram.ipynb │ ├── generateGridVsMCMCschematic.m │ └── generate_psychometric_functions.m ├── matjags.m ├── mhAlgorithm.m ├── model1MCMCconvergence.m ├── model1MCMCse.m ├── model1plot.m ├── model2generate.m ├── model2infer.m ├── model2modelfit.m ├── model2modelpredictions2.m ├── model2plot.m ├── model3generate.m ├── model3infer.m ├── model3nonMCMC.m ├── model3plot.m ├── model3psychometric.m ├── pcfunc.m ├── sampleStats.m └── sanityChecks │ └── sanityCheck2AFC.m ├── jagsmodels ├── model1JAGS.txt ├── model2JAGS.txt └── model3JAGS.txt ├── model1runme.m ├── model2runme.m ├── model3runme.m ├── output ├── m1MAPestimate.mat └── m3MAPestimate.mat ├── runAllModels.m └── setup.m /LICENSE.txt: -------------------------------------------------------------------------------- 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