├── .gitignore ├── Chinese_hamster_CDS.fna.gz ├── LICENSE ├── README.md ├── aa_tokenizer.json ├── chinese_hamster_dictionary.7z ├── codon_counter.py ├── dna_tokenizer.json ├── rnn_evaluate.py ├── rnn_evaluation ├── rnn_history ├── rnn_model.h5 ├── rnn_predict.py ├── rnn_train.py └── sequence_validate.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/.gitignore -------------------------------------------------------------------------------- /Chinese_hamster_CDS.fna.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/Chinese_hamster_CDS.fna.gz -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/README.md -------------------------------------------------------------------------------- /aa_tokenizer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/aa_tokenizer.json -------------------------------------------------------------------------------- /chinese_hamster_dictionary.7z: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/chinese_hamster_dictionary.7z -------------------------------------------------------------------------------- /codon_counter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/codon_counter.py -------------------------------------------------------------------------------- /dna_tokenizer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/dna_tokenizer.json -------------------------------------------------------------------------------- /rnn_evaluate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_evaluate.py -------------------------------------------------------------------------------- /rnn_evaluation: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_evaluation -------------------------------------------------------------------------------- /rnn_history: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_history -------------------------------------------------------------------------------- /rnn_model.h5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_model.h5 -------------------------------------------------------------------------------- /rnn_predict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_predict.py -------------------------------------------------------------------------------- /rnn_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/rnn_train.py -------------------------------------------------------------------------------- /sequence_validate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/drgoulet/Codon-optimization/HEAD/sequence_validate.py --------------------------------------------------------------------------------