├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── plot_box.R ├── plot_calibration.R ├── plot_concordance.R ├── plot_consensus.R ├── plot_corr.R ├── plot_density.R ├── plot_dispersion.R ├── plot_drivers.R ├── plot_heatmap.R ├── plot_ica.R ├── plot_kpca.R ├── plot_lle.R ├── plot_lorenz.R ├── plot_md.R ├── plot_mds.R ├── plot_mv.R ├── plot_pca.R ├── plot_pr.R ├── plot_qq.R ├── plot_quantiles.R ├── plot_roc.R ├── plot_sammon.R ├── plot_similarity.R ├── plot_som.R ├── plot_survival.R ├── plot_taco.R ├── plot_tree.R ├── plot_tsne.R ├── plot_umap.R ├── plot_volcano.R ├── plot_voom.R └── utils.R ├── README.md ├── data └── airway.RData └── man ├── colorize.Rd ├── dist_mat.Rd ├── embed.Rd ├── format_binom.Rd ├── format_features.Rd ├── gg_out.Rd ├── is.color.Rd ├── kpca_fn.Rd ├── matrixize.Rd ├── plot_box.Rd ├── plot_calibration.Rd ├── plot_concordance.Rd ├── plot_consensus.Rd ├── plot_corr.Rd ├── plot_density.Rd ├── plot_dispersion.Rd ├── plot_drivers.Rd ├── plot_heatmap.Rd ├── plot_ica.Rd ├── plot_kpca.Rd ├── plot_lle.Rd ├── plot_lorenz.Rd ├── plot_md.Rd ├── plot_mds.Rd ├── plot_mv.Rd ├── plot_pca.Rd ├── plot_pr.Rd ├── plot_qq.Rd ├── plot_quantiles.Rd ├── plot_roc.Rd ├── plot_sammon.Rd ├── plot_similarity.Rd ├── plot_som.Rd ├── plot_survival.Rd ├── plot_taco.Rd ├── plot_tree.Rd ├── plot_tsne.Rd ├── plot_umap.Rd ├── plot_volcano.Rd ├── plot_voom.Rd ├── pt_alpha.Rd ├── pt_size.Rd ├── stringify.Rd ├── track_cols.Rd └── var_filt.Rd /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dswatson/bioplotr/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dswatson/bioplotr/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: 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