├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── config_create.R ├── config_default.R ├── copy_file.R ├── helper_fix_paths.R ├── helper_null_pipers.R ├── helper_pad.R ├── helper_processx.R ├── is_singularity_apptainer.R ├── list_docker_images.R ├── package.R ├── pull_image.R ├── read_file.R ├── run.R ├── run_auto_mount.R ├── singularity_image_path.R ├── test_docker_installation.R └── test_singularity_installation.R ├── README.Rmd ├── README.md ├── babelwhale.Rproj ├── cran-comments.md ├── man ├── babelwhale.Rd ├── copy_file.Rd ├── create_config.Rd ├── figures │ └── dependencies.png ├── list_docker_images.Rd ├── pull_container.Rd ├── read_file.Rd ├── run.Rd ├── run_auto_mount.Rd ├── singularity_image_path.Rd ├── test_docker_installation.Rd └── test_singularity_installation.Rd ├── revdep ├── .gitignore ├── README.md ├── cran.md ├── failures.md └── problems.md └── tests ├── testthat.R └── testthat ├── helper-skip.R ├── test-config_default.R ├── test-copy_file.R ├── test-helper_processx.R ├── test-run_auto_mount.R ├── test-run_docker.R └── test-test_docker_installation.R /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dynverse/babelwhale/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dynverse/babelwhale/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- 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