├── Data_preprocessing ├── 737K-cratac-v1.txt ├── BC_process.py ├── README.md ├── Snakefile ├── Snakemake.sh ├── cluster.json └── snakemake_dag.png ├── Data_visualization ├── GO_enrichment_analysis.R ├── SpatialDimPlot_new.R ├── SpatialPlot_new.R ├── SpatialPlot_traj.R ├── archR.R ├── getGeneScore_ArchR.R ├── integrative_data_analysis.R ├── metadata_files_for_Seurat_spatial.ipynb └── spatial_data_visualization.R ├── README.md ├── spatial_barcodes └── spatial_barcodes.txt └── workflow.png /Data_preprocessing/737K-cratac-v1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/dyxmvp/Spatial_ATAC-seq/HEAD/Data_preprocessing/737K-cratac-v1.txt -------------------------------------------------------------------------------- /Data_preprocessing/BC_process.py: -------------------------------------------------------------------------------- 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