├── Dockerfile ├── FORUM_logo2.png ├── LICENSE ├── README.md ├── app ├── Database_ressource_version.py ├── build │ ├── Elink_ressource_creator.py │ ├── Id_mapping.py │ ├── checklist.md │ ├── classyfire_functions.py │ ├── convert_association_table_to_triples.py │ ├── create_master_void.py │ ├── data │ │ └── table_info_2021.csv │ ├── download_functions.py │ ├── import_Chemont.py │ ├── import_MeSH.py │ ├── import_MetaNetX.py │ ├── import_MetaNetX_mapping.py │ ├── import_PMID_CID.py │ ├── import_PubChem.py │ ├── import_PubChem_mapping.py │ ├── import_SBML.py │ ├── import_vocabulary.sh │ ├── sbml2rdf │ │ └── SBML2RDF.jar │ └── sbml_processing_functions.py ├── computation │ ├── SPARQL │ │ ├── chebi_with_onto_mesh_used_thesaurus.py │ │ ├── chemont_with_onto_mesh_with_onto.py │ │ ├── cid_SCRDisease.py │ │ ├── cid_mesh.py │ │ ├── cid_mesh_used_thesaurus.py │ │ ├── federated_queries_eg.rq │ │ ├── mesh_to_SCRDisease.py │ │ ├── mesh_to_mesh.py │ │ ├── requests_co_annot.py │ │ └── specie_mesh_used_thesaurus.py │ ├── co_annotation_score │ │ ├── README.md │ │ ├── co_annotated_MeSH.py │ │ └── score.R │ ├── labels.rq │ ├── post-processes │ │ ├── README.md │ │ ├── compute_fisher_exact_test.R │ │ ├── post_process.R │ │ └── weakness │ │ │ └── weakness_test.R │ ├── processing_functions.py │ └── requesting_virtuoso.py └── view │ ├── SPARQL │ └── requests.py │ ├── config │ ├── release-2020 │ │ └── config.ini │ └── test │ │ └── config.ini │ ├── create_view.py │ └── processing_functions.py ├── config ├── release-2020 │ ├── chemont │ │ └── config.ini │ ├── computation │ │ ├── CHEBI_MESH_Thesaurus_Onto │ │ │ └── config.ini │ │ ├── CHEMONT_MESH_Thesaurus_Onto │ │ │ └── config.ini │ │ ├── CID_MESH_Thesaurus │ │ │ └── config.ini │ │ ├── CID_MESH_classic │ │ │ └── config.ini │ │ ├── MESH_MESH │ │ │ └── config.ini │ │ ├── SPECIE_MESH_Thesaurus │ │ │ └── config.ini │ │ └── co_annotated_MeSH │ │ │ ├── config_test.ini │ │ │ ├── config_test2.ini │ │ │ └── request_config.ini │ ├── config.ini │ └── enrichment_analysis │ │ ├── CHEBI_MESH │ │ └── config.ini │ │ ├── CHEMONT_MESH │ │ └── config.ini │ │ ├── CID_MESH │ │ └── config.ini │ │ ├── MESH_MESH │ │ └── config.ini │ │ └── SPECIE_MESH │ │ └── config.ini ├── release-2021 │ ├── computation │ │ ├── CHEBI_MESH │ │ │ └── config.ini │ │ ├── CHEMONT_MESH │ │ │ └── config.ini │ │ ├── CID_MESH │ │ │ └── config.ini │ │ ├── CID_SCRDisease │ │ │ └── config.ini │ │ ├── MESH_MESH │ │ │ └── config.ini │ │ ├── MESH_SCRDisease │ │ │ └── config.ini │ │ ├── SPECIE_MESH_Thesaurus │ │ │ └── config.ini │ │ └── co_annotated_MeSH │ │ │ ├── config_test.ini │ │ │ ├── config_test2.ini │ │ │ └── request_config.ini │ ├── config.ini │ ├── config_Human1_1.7.ini │ ├── enrichment_analysis │ │ ├── config_CHEBI_MESH.ini │ │ ├── config_CHEMONT_MESH.ini │ │ ├── config_CID_MESH.ini │ │ ├── config_CID_SCRDisease.ini │ │ ├── config_MESH_MESH.ini │ │ ├── config_MESH_SCRDisease.ini │ │ └── config_SPECIE_MESH.ini │ ├── import_Chemont.ini │ ├── 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