├── DESCRIPTION ├── NAMESPACE ├── R └── hypergate.R ├── README.md ├── data └── Samusik_01_subset.RData ├── figure ├── unnamed-chunk-10-1.png ├── unnamed-chunk-17-1.png ├── unnamed-chunk-17-2.png ├── unnamed-chunk-18-1.png ├── unnamed-chunk-19-1.png ├── unnamed-chunk-21-1.png └── unnamed-chunk-7-1.png ├── man ├── FNTN_matrix.recycle.Rd ├── F_beta.Rd ├── Samusik_01_subset.Rd ├── boolmat.Rd ├── channels_contributions.Rd ├── color_biplot_by_discrete.Rd ├── contract.Rd ├── contract.update.Rd ├── coreloop.Rd ├── en.locator.Rd ├── expand.Rd ├── expand.update.Rd ├── f.Rd ├── fill_FNTN_matrix.Rd ├── gate_from_biplot.Rd ├── hgate_info.Rd ├── hgate_pheno.Rd ├── hgate_rule.Rd ├── hgate_sample.Rd ├── hypergate.Rd ├── plot_gating_strategy.Rd ├── polygon.clean.Rd ├── reoptimize_strategy.Rd ├── subset_matrix_hg.Rd └── update_gate.Rd └── vignettes ├── Hypergate.Rmd ├── unnamed-chunk-10-1.png ├── unnamed-chunk-17-1.png ├── unnamed-chunk-17-2.png ├── unnamed-chunk-18-1.png ├── unnamed-chunk-19-1.png ├── 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