├── .idea ├── .gitignore ├── DCG_Enhanced_distilGPT2.iml ├── inspectionProfiles │ └── profiles_settings.xml ├── misc.xml ├── modules.xml └── vcs.xml ├── LICENSE ├── README.md ├── __init__.py ├── checkpoint ├── .gitkeep ├── BiomedCLIP-PubMedBERT_256-vit_base_patch16_224 │ └── .gitkeep ├── MedSAM │ └── .gitkeep ├── bert-base-uncased │ └── .gitkeep ├── distilgpt2 │ └── .gitkeep └── stanford │ └── chexbert │ └── .gitkeep ├── config ├── train_iu_xray.yaml └── train_mimic_cxr.yaml ├── dataset ├── iu_x-ray │ ├── adjacency_matrix_191 │ │ └── .gitkeep │ ├── image_features │ │ └── .gitkeep │ ├── images │ │ └── .gitkeep │ ├── node_features_gpt2.h5 │ └── node_mapping.json └── mimic_cxr │ ├── adjacency_matrix_276 │ └── .gitkeep │ ├── image_features │ └── .gitkeep │ └── images │ └── .gitkeep ├── folder_structure.txt ├── medsam2distilgpt2_iu_xray.py ├── medsam2distilgpt2_mimic_cxr.py ├── requirements.txt ├── segment_anything ├── __init__.py ├── automatic_mask_generator.py ├── build_sam.py ├── modeling │ ├── __init__.py │ ├── common.py │ ├── image_encoder.py │ ├── mask_decoder.py │ ├── prompt_encoder.py │ ├── sam.py │ └── transformer.py ├── predictor.py └── utils │ ├── __init__.py │ ├── amg.py │ ├── onnx.py │ └── transforms.py ├── tools ├── chexbert.py ├── classifier.py ├── dataset │ ├── dataset.py │ ├── iu_x_ray_chen.py │ ├── iu_x_ray_chen_tokenizer.py │ ├── iu_xray_dataset_forme.py │ ├── mimic_cxr_chen.py │ ├── mimic_cxr_chen_tokenizer.py │ └── mimic_cxr_dataset_forme.py ├── generate_graph │ ├── README.md │ ├── generate_adjmatrix.py │ ├── process.json │ └── process.py ├── graph.py ├── metrics │ ├── chexbert.py │ ├── coco.py │ ├── natural_language.py │ └── report_logger.py ├── multi_image.py ├── new_module.py ├── offline_retrieval │ ├── README.md │ ├── __init__.py │ ├── generate_memo_list.py │ └── in_memory.py └── utils.py ├── train_ver4_iu_xray.py └── train_ver4_mimic.py /.idea/.gitignore: -------------------------------------------------------------------------------- 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