├── 2016-07-15-assessing-metagenome-assembly.md ├── 2016-07-15-counting-abundance-with-mapped-reads.md ├── 2016-07-15-metaG-assembly.md ├── 2016-07-15-metaG-sequencing-preprocessing.md ├── 2017-08-09-assessing-metagenome-assembly.md ├── 2017-08-09-counting-abundance-with-mapped-reads.md ├── 2017-08-09-if-counting-each-gene.md ├── 2017-08-09-metaG-assembly.md ├── 2017-08-09-metaG-sequencing-preprocessing.md ├── 2018-06-29-assessing-metagenome-assembly.md ├── 2018-06-29-counting-abundance-with-mapped-reads.md ├── 2018-06-29-metaG-assembly.md ├── 2018-06-29-metaG-sequencing-preprocessing.md ├── README.md ├── edamame_metagenomics_overview.pdf ├── edamame_metagenomics_overview.pptx ├── get_count_table.py ├── metagenome_overview2018.pdf └── metagenome_tutorial.pdf /2016-07-15-assessing-metagenome-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2016-07-15-assessing-metagenome-assembly.md -------------------------------------------------------------------------------- /2016-07-15-counting-abundance-with-mapped-reads.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2016-07-15-counting-abundance-with-mapped-reads.md -------------------------------------------------------------------------------- /2016-07-15-metaG-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2016-07-15-metaG-assembly.md -------------------------------------------------------------------------------- /2016-07-15-metaG-sequencing-preprocessing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2016-07-15-metaG-sequencing-preprocessing.md -------------------------------------------------------------------------------- /2017-08-09-assessing-metagenome-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2017-08-09-assessing-metagenome-assembly.md -------------------------------------------------------------------------------- /2017-08-09-counting-abundance-with-mapped-reads.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2017-08-09-counting-abundance-with-mapped-reads.md -------------------------------------------------------------------------------- /2017-08-09-if-counting-each-gene.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2017-08-09-if-counting-each-gene.md -------------------------------------------------------------------------------- /2017-08-09-metaG-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2017-08-09-metaG-assembly.md -------------------------------------------------------------------------------- /2017-08-09-metaG-sequencing-preprocessing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2017-08-09-metaG-sequencing-preprocessing.md -------------------------------------------------------------------------------- /2018-06-29-assessing-metagenome-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2018-06-29-assessing-metagenome-assembly.md -------------------------------------------------------------------------------- /2018-06-29-counting-abundance-with-mapped-reads.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2018-06-29-counting-abundance-with-mapped-reads.md -------------------------------------------------------------------------------- /2018-06-29-metaG-assembly.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2018-06-29-metaG-assembly.md -------------------------------------------------------------------------------- /2018-06-29-metaG-sequencing-preprocessing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edamame-course/Metagenome/HEAD/2018-06-29-metaG-sequencing-preprocessing.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # 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