├── .gitignore ├── License.md ├── README.md ├── data_preproc ├── Climate │ ├── generate_folds.py │ ├── process.py │ └── readme.md └── MIMIC │ ├── Admissions.ipynb │ ├── DataMerging.ipynb │ ├── Extra_covariates.ipynb │ ├── LabEvents.ipynb │ ├── Outputs.ipynb │ ├── Prescriptions.ipynb │ ├── Tensor Factorization.ipynb │ ├── Untitled.ipynb │ └── readme.md ├── experiments ├── Brusselator │ └── run_gruode.py ├── Climate │ ├── Logs │ │ └── small_climate │ │ │ ├── events.out.tfevents.1558519124.kusanagi │ │ │ ├── events.out.tfevents.1558519233.kusanagi │ │ │ ├── events.out.tfevents.1558519287.kusanagi │ │ │ └── events.out.tfevents.1558519348.kusanagi │ └── climate_gruode.py ├── MIMIC │ ├── cross_val_gruODE.py │ ├── mimic_classif.py │ └── mimic_gruode.py └── double_OU │ └── double_ou_gruode.py ├── gru_ode_bayes ├── __init__.py ├── data_utils.py ├── datasets │ ├── BXLator │ │ ├── BXLator.csv │ │ └── datagen.py │ ├── Climate │ │ ├── folds │ │ │ ├── chunk_fold_idx_0 │ │ │ ├── chunk_fold_idx_1 │ │ │ ├── chunk_fold_idx_2 │ │ │ ├── chunk_fold_idx_3 │ │ │ ├── chunk_fold_idx_4 │ │ │ ├── fold_idx_0 │ │ │ ├── fold_idx_1 │ │ │ ├── fold_idx_2 │ │ │ ├── fold_idx_3 │ │ │ ├── fold_idx_4 │ │ │ ├── small_chunk_fold_idx_0 │ │ │ ├── small_chunk_fold_idx_1 │ │ │ ├── small_chunk_fold_idx_2 │ │ │ ├── small_chunk_fold_idx_3 │ │ │ └── small_chunk_fold_idx_4 │ │ └── small_chunked_sporadic.csv │ ├── __init__.py │ └── double_OU │ │ ├── __init__.py │ │ ├── double_OU.csv │ │ └── double_OU.py ├── logger.py ├── models.py └── paper_plotting.py ├── setup.py └── torchdiffeq ├── setup.py └── torchdiffeq ├── __init__.py └── _impl ├── __init__.py ├── adams.py ├── adjoint.py ├── dopri5.py ├── fixed_adams.py ├── fixed_grid.py ├── interp.py ├── misc.py ├── odeint.py ├── rk_common.py ├── solvers.py └── tsit5.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edebrouwer/gru_ode_bayes/HEAD/.gitignore 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