├── .gitignore ├── .ipynb_checkpoints ├── Untitled-checkpoint.ipynb └── Untitled1-checkpoint.ipynb ├── Binsanity2-Beta ├── Binsanity2-beta ├── README.txt ├── binsanity2-beta-wf-largeassemblies.sh └── binsanity2-beta-wf-smallassemblies.sh ├── Dockerfile ├── Dockerfile ├── README.md └── build.sh ├── LICENSE ├── README.md ├── README.rst ├── _config.yml ├── bin ├── Binsanity ├── Binsanity-lc ├── Binsanity-profile ├── Binsanity-refine └── Binsanity-wf ├── conda ├── build.sh └── meta.yaml ├── deprecated ├── Binsanity-profile-multicov ├── contig-coverage-bam └── cov-combine.py ├── dist ├── Binsani2-0.2.1.tar.gz ├── Binsanity-0.2.0.tar.gz ├── Binsanity-0.2.1.tar.gz ├── Binsanity-0.2.2.tar.gz ├── Binsanity-0.2.4.tar.gz ├── Binsanity-0.2.5.1.tar.gz ├── Binsanity-0.2.5.2.tar.gz ├── Binsanity-0.2.5.3.tar.gz ├── Binsanity-0.2.5.4.tar.gz ├── Binsanity-0.2.5.6.tar.gz ├── Binsanity-0.2.5.7.tar.gz ├── Binsanity-0.2.5.8.tar.gz ├── Binsanity-0.2.5.tar.gz └── Binsanity-0.2.6.1-py3.6.egg ├── docker └── Dockerfile ├── example ├── Infant_gut_assembly.cov.x100.lognorm └── igm.fa ├── setup.py ├── test-scripts └── Binsanity-lc └── utils ├── bin_evaluation ├── bin_output ├── checkm_analysis ├── concat ├── get-ids ├── identifyHMM ├── makeFileTabDelimited.py ├── simplify-fasta ├── split_file └── transform-coverage-profile /.gitignore: -------------------------------------------------------------------------------- 1 | Binsanity.egg-info 2 | build 3 | -------------------------------------------------------------------------------- /.ipynb_checkpoints/Untitled-checkpoint.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edgraham/BinSanity/HEAD/.ipynb_checkpoints/Untitled-checkpoint.ipynb -------------------------------------------------------------------------------- /.ipynb_checkpoints/Untitled1-checkpoint.ipynb: -------------------------------------------------------------------------------- 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