├── CL_Interface.py ├── CrisprOpenDB ├── CrisprOpenDB_HostID.py ├── SpacersDB │ ├── CrisprOpenDB.py │ └── __init__.py └── __init__.py ├── DBfiles.md5 ├── Dion_al_2020_notebook.ipynb ├── README.md ├── TestGenomes ├── AY133112.fasta ├── KJ489400.fasta ├── MK075002.fasta ├── MT074469.fasta └── MT074470.fasta ├── conda_env.txt ├── genbank_20200423.csv ├── refseq_20200423.csv ├── setup.py └── shkoporov_virome.phages_combined.txt /CL_Interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edzuf/CrisprOpenDB/HEAD/CL_Interface.py -------------------------------------------------------------------------------- /CrisprOpenDB/CrisprOpenDB_HostID.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/edzuf/CrisprOpenDB/HEAD/CrisprOpenDB/CrisprOpenDB_HostID.py -------------------------------------------------------------------------------- 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