├── .github ├── ISSUE_TEMPLATE │ ├── add_content.md │ ├── bug_report.md │ ├── fixing_exisiting_page.md │ ├── general.md │ └── new-page-request.md └── workflows │ ├── jekyll.yml │ ├── link-checker.yml │ └── tool_list_conversion.yml ├── .gitignore ├── 404.md ├── CNAME ├── CODEOWNERS ├── CODE_OF_CONDUCT.md ├── Gemfile ├── LICENSE ├── README.md ├── TEMPLATE-page.md ├── _config.yml ├── _data ├── CONTRIBUTORS.yaml ├── affiliations.yml ├── events.yml ├── footer.yml ├── news.yml ├── sidebars │ ├── about.yml │ ├── contribute.yml │ └── main.yml ├── tool_and_resource_list.yml └── topnav.yml ├── _sass ├── _bootstrap_variables.scss ├── _custom_classes.scss └── _custom_variables.scss ├── about ├── accessibility.md ├── contact.md ├── contributors.md ├── editorial-board.md ├── index.md ├── media-kit.md ├── news.md ├── privacy.md └── support.md ├── assets └── img │ ├── android-chrome-192x192.png │ ├── android-chrome-512x512.png │ ├── apple-touch-icon.png │ ├── arrow.png │ ├── arrow.svg │ ├── by-covid-inverted.svg │ ├── by-covid.svg │ ├── elixir_logo.svg │ ├── eu-flag-white.svg │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon.ico │ ├── main_logo.png │ ├── main_logo.svg │ ├── main_logo_condensed.png │ ├── main_logo_condensed.svg │ ├── main_logo_inverted.png │ ├── main_logo_inverted.svg │ ├── main_logo_vertical.png │ ├── main_logo_vertical.svg │ ├── main_logo_vertical_inverted.png │ ├── main_logo_vertical_inverted.svg │ ├── safari-pinned-tab.svg │ ├── section-icons │ ├── chart-line-duotone.svg │ ├── disease-duotone.svg │ ├── dna-duotone.svg │ ├── dna-person-duotone.svg │ ├── fingerprint-duotone.svg │ ├── flag-duotone.svg │ ├── gears-duotone.svg │ ├── graduation-cap-duotone.svg │ ├── hospital-user-duotone.svg │ ├── list-timeline-duotone.svg │ ├── magnifying-glass-chart-duotone.svg │ ├── network-wired-duotone.svg │ ├── paper-plane-duotone.svg │ ├── quote-left-duotone.svg │ ├── signs-post-duotone.svg │ ├── stars-duotone.svg │ ├── users-duotone.svg │ └── users-viewfinder-duotone.svg │ └── site.webmanifest ├── attributing-credit ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── contribute ├── copyright.md ├── editorial-board-guide.md ├── editors-checklist.md ├── github-way.md ├── google-doc-way.md ├── index.md ├── markdown-cheat-sheet.md ├── page-metadata.md ├── preview-changes.md ├── style-guide.md ├── tool-resource-update.md ├── website-overview.md └── working-with-git.md ├── data-analysis ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── data-communication ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── data-description ├── fair-data.md ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── data-sources ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── ethical-legal-and-social-issues ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── images ├── 3_dots_github.png ├── Different_health_data_sources.png ├── EMC_pilot_data_diagram.png ├── EMC_pilot_dataset_composition_diagram.png ├── EMC_pilot_sample_diagram.png ├── KoroGenoEst_graphicalabstract.jpeg ├── MBAT_scheme.png ├── Swedish_pathogens_portal.png ├── baselineUseCase_DQA_InteractiveReport.png ├── baselineUseCase_DataValidationReport.png ├── baselineUseCase_DecisionTree.png ├── baselineUseCase_ImputationMissingValues.png ├── change_branch.png ├── cohort_browser_img.png ├── commit_new_branch.png ├── commit_to_master_github.png ├── create_new_file_github.png ├── create_pr_from_fork.png ├── data-communication │ ├── JHU_barcharts.png │ ├── RECOVAC_dash.png │ ├── Swedish_wordclouds.png │ ├── dashboards_ecdc_hantavirus.png │ ├── dashboards_koroona_agegroups.png │ ├── distribution_population_pyramid.png │ ├── ecdc_boxplot.png │ ├── grouped_bar_chart.png │ ├── histogram.png │ ├── indicator_value.png │ ├── libraries_korogeno_circles.png │ ├── libraries_korogeno_grid.png │ ├── maakond_blue.png │ ├── maakond_yellow.png │ ├── maps_gatech_riskestimates.png │ ├── maps_gisanddata.png │ ├── maps_koroonakaart.png │ ├── maps_virginia_active.png │ ├── owid_time.png │ ├── phylogenetic_tree.png │ ├── scatterplot.png │ ├── stacked_barcharts.png │ ├── stacked_roc.png │ ├── table.png │ ├── timeseries_ourworldindata_death.png │ ├── vaccine_heatmap.png │ ├── violinplots.jpeg │ └── wastewater_line.png ├── deploy_using_gh_pages.png ├── draft_pullrequest_github.png ├── ena-submission-toolbox.svg ├── estonian_prevalence_study_design.jpg ├── files_changed_github.png ├── googledoc_way_flow.svg ├── infrastructures │ ├── ELIXIR_ESTONIA_white_background.png │ ├── Ebi_official_logo.png │ ├── Estonian_scientific_computing_infrastructure.png │ ├── eu-openscreen.png │ ├── eurobioimaging-logo.svg │ └── isidore-logo.png ├── institutions │ ├── Albert-Ludwigs-Universität_Freiburg_2009_logo.svg │ ├── Erasmus_med_centre.svg │ ├── Finnish_Institute_for_Health_and_Welfare_logo.png │ ├── IACS_Logomarca.png │ ├── SciLifeLab_Logotype_Green_POS.png │ ├── Ukhd_logo.svg │ ├── VIB-notagline-pos.svg │ ├── fraunhofer_ITMP_institute_logo.png │ ├── goeg_logo_305x58_0.png │ ├── ringlogo_eng_lat_sinine.svg │ ├── sciensano_logo_225w.png │ └── terviseamet_3lovi_eng.png ├── kgg_showcase_overview.png ├── linking_issues_github.png ├── logos │ ├── ELIXIR-logo.svg │ ├── FWO-logo.svg │ ├── Flag_of_Europe.svg │ └── converge_logo.svg ├── name_file_github.png ├── propose_changes_github.png ├── prototyping_use_cases_to_tackle_future_pandemic_Figure-1.png ├── prototyping_use_cases_to_tackle_future_pandemic_Figure-2.png ├── prototyping_use_cases_to_tackle_future_pandemic_Figure-3.png ├── raw_github.png ├── recommended_dataflow.png ├── showcase_covid19_galaxy_overview.png ├── sync_branch.png └── your_own_fork.png ├── index.html ├── national-resources ├── TEMPLATE_resources.md ├── belgium.md ├── estonia.md ├── index.md ├── netherlands.md ├── norway.md ├── sweden.md └── switzerland.md ├── provenance ├── general-guidelines.md ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── quality-control ├── human-biomolecular-data.md ├── human-clinical-and-health-data.md ├── index.md ├── pathogen-characterisation.md └── socioeconomic-data.md ├── showcase ├── TEMPLATE-showcase.md ├── brain-autoradiography.md ├── covid19-galaxy.md ├── ena-data-submission-toolbox.md ├── estonian-prevalence-study.md ├── index.md ├── knowledge-graph-generator.md ├── korogenoest.md ├── linked-cohort-data.md ├── prototyping-research-questions.md └── 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