├── .github └── workflows │ └── static.yml ├── .gitignore ├── 01_intro.md ├── 02_about.md ├── 03_intro_epi.md ├── 04_probability_distributions.ipynb ├── 05_Bayesian_inference.ipynb ├── 06_Monte_Carlo.ipynb ├── 07_MCMC.ipynb ├── 08_PPLs.md ├── 09_intro_to_Numpyro.ipynb ├── 09a_JAX_patterns.ipynb ├── 10_focus_on_priors.ipynb ├── 11_Bayesian_workflow.ipynb ├── 12_model_comparison.ipynb ├── 13_glms.md ├── 14_logistic_regression.ipynb ├── 15_hierarchical_modelling.ipynb ├── 16_AR.ipynb ├── 17_GP_priors.ipynb ├── 18_GP_inference.ipynb ├── 19_spat_stat.ipynb ├── 19a_geostatistics.ipynb ├── 20_areal_data.ipynb ├── 21_LGCP.ipynb ├── 22_ODEs.ipynb ├── 23_ID_modelling.ipynb ├── 24_ABMs.ipynb ├── 25_surrogates.ipynb ├── 26_flax.ipynb ├── 999_acknowledgements.md ├── 999_bibliography.md ├── 999_upcoming.md ├── CITATION.cff ├── Howell1.csv ├── LICENSE ├── README.md ├── _config.yml ├── _static └── custom.css ├── _toc.yml ├── assets ├── bayes_workflow.png ├── boxes_loop.png ├── idm1.png ├── idm2.png ├── idm3.png ├── partial_pooled_model.png ├── pooled_model.png ├── pop_group.png ├── references.bib └── unpooled_model.png ├── data ├── Howell1.csv ├── influenza_england_1978_school.csv ├── sleep.csv ├── sleepstudy.csv └── south-africa.geojson ├── logo.png ├── requirements.txt └── sleepstudy.csv /.github/workflows/static.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/elizavetasemenova/prob-epi/HEAD/.github/workflows/static.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | _build/* 3 | -------------------------------------------------------------------------------- /01_intro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/elizavetasemenova/prob-epi/HEAD/01_intro.md 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