├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── CHANGELOG.md ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _build │ ├── .doctrees │ │ ├── api.doctree │ │ ├── autoapi │ │ │ ├── index.doctree │ │ │ └── milopy │ │ │ │ ├── core │ │ │ │ └── index.doctree │ │ │ │ ├── index.doctree │ │ │ │ ├── plot │ │ │ │ └── index.doctree │ │ │ │ ├── tests │ │ │ │ ├── index.doctree │ │ │ │ ├── test_DA_nhoods │ │ │ │ │ └── index.doctree │ │ │ │ ├── test_annotate_nhoods │ │ │ │ │ └── index.doctree │ │ │ │ ├── test_count_nhoods │ │ │ │ │ └── index.doctree │ │ │ │ ├── test_io │ │ │ │ │ └── index.doctree │ │ │ │ ├── test_make_nhoods │ │ │ │ │ └── index.doctree │ │ │ │ └── test_plot │ │ │ │ │ └── index.doctree │ │ │ │ ├── utils │ │ │ │ └── index.doctree │ │ │ │ └── version │ │ │ │ └── index.doctree │ │ ├── index.doctree │ │ ├── milopy_example.doctree │ │ └── readme.doctree │ ├── _sources │ │ ├── api.rst.txt │ │ ├── autoapi │ │ │ ├── index.rst.txt │ │ │ └── milopy │ │ │ │ ├── core │ │ │ │ └── index.rst.txt │ │ │ │ ├── index.rst.txt │ │ │ │ ├── plot │ │ │ │ └── index.rst.txt │ │ │ │ ├── tests │ │ │ │ ├── index.rst.txt │ │ │ │ ├── test_DA_nhoods │ │ │ │ │ └── index.rst.txt │ │ │ │ ├── test_annotate_nhoods │ │ │ │ │ └── index.rst.txt │ │ │ │ ├── test_count_nhoods │ │ │ │ │ └── index.rst.txt │ │ │ │ ├── test_io │ │ │ │ │ └── index.rst.txt │ │ │ │ ├── test_make_nhoods │ │ │ │ │ └── index.rst.txt │ │ │ │ └── test_plot │ │ │ │ │ └── index.rst.txt │ │ │ │ ├── utils │ │ │ │ └── index.rst.txt │ │ │ │ └── version │ │ │ │ └── index.rst.txt │ │ └── index.rst.txt │ ├── api.html │ ├── autoapi │ │ ├── index.html │ │ └── milopy │ │ │ ├── core │ │ │ └── index.html │ │ │ ├── index.html │ │ │ ├── plot │ │ │ └── index.html │ │ │ ├── tests │ │ │ ├── index.html │ │ │ ├── test_DA_nhoods │ │ │ │ └── index.html │ │ │ ├── test_annotate_nhoods │ │ │ │ └── index.html │ │ │ ├── test_count_nhoods │ │ │ │ └── index.html │ │ │ ├── test_io │ │ │ │ └── index.html │ │ │ ├── test_make_nhoods │ │ │ │ └── index.html │ │ │ └── test_plot │ │ │ │ └── index.html │ │ │ ├── utils │ │ │ └── index.html │ │ │ └── version │ │ │ └── index.html │ ├── doctrees │ │ ├── environment.pickle │ │ └── index.doctree │ ├── html │ │ ├── .buildinfo │ │ ├── _sources │ │ │ └── index.rst.txt │ │ ├── _static │ │ │ ├── _sphinx_javascript_frameworks_compat.js │ │ │ ├── alabaster.css │ │ │ ├── basic.css │ │ │ ├── custom.css │ │ │ ├── doctools.js │ │ │ ├── documentation_options.js │ │ │ ├── file.png │ │ │ ├── jquery-3.6.0.js │ │ │ ├── jquery.js │ │ │ ├── language_data.js │ │ │ ├── minus.png │ │ │ ├── plus.png │ │ │ ├── pygments.css │ │ │ ├── searchtools.js │ │ │ ├── underscore-1.13.1.js │ │ │ └── underscore.js │ │ ├── genindex.html │ │ ├── index.html │ │ ├── milopy.rst │ │ ├── milopy.tests.rst │ │ ├── modules.rst │ │ ├── objects.inv │ │ ├── search.html │ │ └── searchindex.js │ ├── index.html │ └── reports │ │ └── milopy_example.err.log ├── api.rst ├── conf.py ├── index.md ├── index.rst ├── jupyter_execute │ ├── 19cffa128bdd43873065fb687f6783d072fd13d6a46e9571e9df4e86ef7f8e01.png │ ├── 60fe2e0e3f3b249ef5c44df2c62e4947bfa5fe5376652a22d18cd443c25bf3f2.png │ ├── 882e4262f5b1f970a56379ef517f24e1c50c08880d6cfd46d6d1184318fdc5f5.png │ ├── 8ab561250afc6b0c8550159dd96f6ac996a77a173eac1f617b88016d594433f3.png │ ├── 8e315beb2b1c3159b4475845d7131f21850c0afadd685ce52119278f60d61e53.png │ ├── 9fdf0fa20b948b519daf9016a4ef15fac541369cec8ac9c2a0f9bccf45231e71.png │ ├── fc2ef72cf4b4a63a47d0cde09b2e76b5d70c70e17e2e30e5d9149f8a766a2675.png │ └── milopy_example.ipynb ├── make.bat ├── milopy_example.ipynb ├── readme.rst └── requirements.txt ├── milopy ├── __init__.py ├── core.py ├── plot.py ├── tests │ ├── __init__.py │ ├── test_DA_nhoods.py │ ├── test_annotate_nhoods.py │ ├── test_count_nhoods.py │ ├── test_io.py │ ├── test_make_nhoods.py │ └── test_plot.py ├── utils.py └── version.py ├── notebooks └── milopy_example.ipynb ├── requirements.txt └── setup.py /.github/workflows/python-package.yml: 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