├── .gitignore ├── README.md ├── data ├── disease │ └── disease_genes.tsv ├── dvd │ └── dvd.dat ├── indication │ ├── disease_to_drugs.pcl.kegg │ ├── disease_to_drugs.pcl.medi │ ├── disease_to_drugs.pcl.metab2mesh │ └── disease_to_drugs.pcl.ndfrt ├── network │ └── network.sif ├── proximity │ ├── center.dat │ ├── closest.dat │ ├── kernel.dat │ ├── separation.dat │ └── shortest.dat ├── similarity │ ├── chemical.dat │ ├── lincs.dat │ ├── side-effect-weighted.dat │ ├── target-ppi-z.dat │ ├── target-ppi.dat │ └── target-weighted.dat ├── target │ └── drug_to_geneids.pcl.all └── toy.sif ├── palliative.csv ├── proximity.dat ├── proximity.ipynb └── proximity_similarity.dat /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints/ 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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