├── .gitignore ├── 01_scripts ├── 01_blast_against_swissprot.sh ├── 02_get_uniprot_info.sh ├── 03_annotate_genes.py ├── 04_goatools.sh └── 05_filter_goatools.py ├── 02_go_database └── .gitignore ├── 03_sequences └── .gitignore ├── 04_blast_results └── .gitignore ├── 05_annotations └── .gitignore ├── 06_fisher_tests └── .gitignore ├── LICENSE └── README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/.gitignore -------------------------------------------------------------------------------- /01_scripts/01_blast_against_swissprot.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/01_scripts/01_blast_against_swissprot.sh -------------------------------------------------------------------------------- /01_scripts/02_get_uniprot_info.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/01_scripts/02_get_uniprot_info.sh -------------------------------------------------------------------------------- /01_scripts/03_annotate_genes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/01_scripts/03_annotate_genes.py -------------------------------------------------------------------------------- /01_scripts/04_goatools.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/01_scripts/04_goatools.sh -------------------------------------------------------------------------------- /01_scripts/05_filter_goatools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/01_scripts/05_filter_goatools.py -------------------------------------------------------------------------------- /02_go_database/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /03_sequences/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /04_blast_results/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /05_annotations/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /06_fisher_tests/.gitignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/enormandeau/go_enrichment/HEAD/README.md --------------------------------------------------------------------------------