├── .Rbuildignore ├── .coderabbit.yaml ├── .github ├── .gitignore ├── dependabot.yml └── workflows │ ├── R-CMD-check.yaml │ ├── check-surveys.yaml │ ├── document.yaml │ ├── lint-changed-files.yaml │ ├── pkgdown.yaml │ ├── pr-commands.yaml │ ├── render_readme.yaml │ ├── style.yaml │ └── test-coverage.yaml ├── .gitignore ├── .lintr ├── .travis.yml ├── .vscode ├── extensions.json └── settings.json ├── CLAUDE.md ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── as_contact_survey.R ├── check.R ├── checkers.R ├── cite.R ├── clean.R ├── contact-matrix-utils.R ├── contact_matrix.R ├── datasets.R ├── download_survey.R ├── get_survey.R ├── globals.R ├── limits_to_agegroups.R ├── lists.R ├── load-survey-utils.R ├── load_survey.R ├── matrix_plot.R ├── new_contact_survey.R ├── pop_age.R ├── reduce_agegroups.R ├── socialmixr-package.R ├── survey-country-population.R ├── survey-impute-ages.R ├── survey-process-age.R ├── survey.R ├── utils.R └── wpp_age.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── air.toml ├── codecov.yml ├── cran-comments.md ├── data └── polymod.rda ├── inst └── dev │ ├── check_all_surveys.r │ └── dl_all_surveys.r ├── man ├── as_contact_survey.Rd ├── check.Rd ├── clean.Rd ├── contact_matrix.Rd ├── dot-get_survey.Rd ├── download_survey.Rd ├── figures │ ├── lifecycle-deprecated.svg │ ├── lifecycle-experimental.svg │ ├── lifecycle-stable.svg │ └── lifecycle-superseded.svg ├── get_citation.Rd ├── get_survey.Rd ├── impute_contact_ages.Rd ├── impute_participant_ages.Rd ├── is_doi.Rd ├── limits_to_agegroups.Rd ├── list_surveys.Rd ├── load_survey.Rd ├── matrix_plot.Rd ├── new_contact_survey.Rd ├── polymod.Rd ├── pop_age.Rd ├── reduce_agegroups.Rd ├── survey.Rd ├── survey_countries.Rd ├── survey_country_population.Rd ├── survey_impute_ages.Rd ├── survey_process_ages.Rd ├── wpp_age.Rd └── wpp_countries.Rd ├── socialmixr.Rproj ├── tests ├── testthat.R └── testthat │ ├── _snaps │ ├── agegroups.md │ ├── as_contact_survey.md │ ├── checks.md │ ├── countries.md │ ├── download-survey.md │ ├── matrix.md │ ├── process-age.md │ ├── survey-country-population.md │ └── surveys.md │ ├── test-agegroups.r │ ├── test-as_contact_survey.r │ ├── test-checks.r │ ├── test-countries.r │ ├── test-download-survey.R │ ├── test-get-age-limits.R │ ├── test-matrix.r │ ├── test-plot.r │ ├── test-process-age.R │ ├── test-survey-country-population.R │ ├── test-survey-impute-ages.R │ └── test-surveys.r └── vignettes ├── intro.qmd ├── socialmixr.Rmd └── socialmixr.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/epiforecasts/socialmixr/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.coderabbit.yaml: -------------------------------------------------------------------------------- 1 | reviews: 2 | request_changes_workflow: true 3 | -------------------------------------------------------------------------------- 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