├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore ├── dependabot.yml └── workflows │ ├── R-CMD-check.yaml │ ├── dependency-change.yaml │ ├── lint-changed-files.yaml │ ├── pkgdown.yaml │ ├── render_readme.yml │ ├── test-coverage.yaml │ ├── update-citation-cff.yaml │ └── update-copyright-year.yml ├── .gitignore ├── .lintr ├── CITATION.cff ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── accessors.R ├── aggregate.R ├── calc_dist_params.R ├── checkers.R ├── coercion.R ├── convert_params.R ├── create_prob_distribution.R ├── data.R ├── dev-utils.R ├── epiparameter-package.R ├── epiparameter-utils.R ├── epiparameter.R ├── epiparameter_db.R ├── extract_param.R ├── format.R ├── get_percentiles.R ├── options.R ├── parameter_tbl.R ├── plot.R ├── print.R ├── utils.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── cran-comments.md ├── data-raw └── epireview_core_cols.R ├── data └── epireview_core_cols.rda ├── epiparameter.Rproj ├── inst ├── CITATION └── WORDLIST ├── man ├── aggregate.multi_epiparameter.Rd ├── as.data.frame.epiparameter.Rd ├── as.data.frame.multi_epiparameter.Rd ├── as.function.epiparameter.Rd ├── as_epiparameter.Rd ├── as_epiparameter.data.frame.Rd ├── assert_epiparameter.Rd ├── c.epiparameter.Rd ├── calc_disc_dist_quantile.Rd ├── convert_params_to_summary_stats.Rd ├── convert_summary_stats_to_params.Rd ├── create_citation.Rd ├── create_metadata.Rd ├── create_method_assess.Rd ├── create_prob_distribution.Rd ├── create_region.Rd ├── create_summary_stats.Rd ├── create_uncertainty.Rd ├── discretise.Rd ├── dot-calc_dist_params.Rd ├── dot-check_optim_conv.Rd ├── dot-citet.Rd ├── dot-clean_params.Rd ├── dot-clean_string.Rd ├── dot-clean_uncertainty.Rd ├── dot-convert_params_gamma.Rd ├── dot-convert_params_geom.Rd ├── dot-convert_params_lnorm.Rd ├── dot-convert_params_nbinom.Rd ├── dot-convert_params_weibull.Rd ├── dot-convert_summary_stats_gamma.Rd ├── dot-convert_summary_stats_geom.Rd ├── dot-convert_summary_stats_lnorm.Rd ├── dot-convert_summary_stats_nbinom.Rd ├── dot-convert_summary_stats_weibull.Rd ├── dot-distributional_family.Rd ├── dot-epiparameter_df_to_epiparameter.Rd ├── dot-extract_param.Rd ├── dot-get_percentiles.Rd ├── dot-get_sym_percentiles.Rd ├── dot-is_epireview.Rd ├── epidist_db.Rd ├── epiparameter-package.Rd ├── epiparameter.Rd ├── epiparameter_db.Rd ├── epiparameter_distribution_functions.Rd ├── epiparameter_options.Rd ├── epireview_core_cols.Rd ├── extract_param.Rd ├── extraction_functions.Rd ├── family.epiparameter.Rd ├── figures │ ├── README-plot-epidist-1.png │ ├── README-plot-epidist-cdf-1.png │ ├── README-plot-epiparameter-1.png │ ├── README-plot-epiparameter-cdf-1.png │ ├── lifecycle-archived.svg │ ├── lifecycle-defunct.svg │ ├── lifecycle-deprecated.svg │ ├── lifecycle-experimental.svg │ ├── lifecycle-maturing.svg │ ├── lifecycle-questioning.svg │ ├── lifecycle-soft-deprecated.svg │ ├── lifecycle-stable.svg │ ├── lifecycle-superseded.svg │ └── logo.png ├── format.epiparameter.Rd ├── get_citation.Rd ├── get_citation.epiparameter.Rd ├── get_citation.multi_epiparameter.Rd ├── get_parameters.Rd ├── get_parameters.epiparameter.Rd ├── is_continuous.Rd ├── is_epiparameter.Rd ├── is_epiparameter_df.Rd ├── is_epiparameter_params.Rd ├── is_parameterised.Rd ├── is_truncated.Rd ├── lines.epiparameter.Rd ├── mean.epiparameter.Rd ├── new_epiparameter.Rd ├── parameter_tbl.Rd ├── plot.epiparameter.Rd ├── plot.multi_epiparameter.Rd ├── print.epiparameter.Rd ├── print.multi_epiparameter.Rd ├── reexports.Rd └── test_epiparameter.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── po └── R-epiparameter.pot ├── revdep ├── .gitignore ├── README.md ├── cran.md ├── failures.md └── problems.md ├── tests ├── spelling.R ├── testthat.R └── testthat │ ├── _snaps │ ├── convert_params.md │ ├── epiparameter │ │ ├── epiparameter-plot-non-default-range.svg │ │ ├── epiparameter-plot-units.svg │ │ └── epiparameter-plot.svg │ ├── parameter_tbl.md │ ├── plot │ │ └── plot-multi-epiparameter.svg │ └── print.md │ ├── helper-state.R │ ├── setup-options.R │ ├── test-accessors.R │ ├── test-aggregate.R │ ├── test-calc_dist_params.R │ ├── test-checkers.R │ ├── test-coercion.R │ ├── test-convert_params.R │ ├── test-create_prob_distribution.R │ ├── test-epiparameter-utils.R │ ├── test-epiparameter.R │ ├── test-epiparameter_db.R │ ├── test-extract_param.R │ ├── test-get_percentiles.R │ ├── test-parameter_tbl.R │ ├── test-plot.R │ ├── test-print.R │ └── test-utils.R ├── tools └── check.env └── vignettes ├── .gitignore ├── articles ├── .gitignore ├── _extract-bias.Rmd.orig ├── data_from_epireview.Rmd ├── extract-bias.Rmd ├── plot-estim-var-range-1.png ├── plot-results-1.png ├── plot-results-med-range-1.png └── plot-results-percentiles-1.png ├── data_protocol.Rmd ├── database.Rmd ├── 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