├── .gitignore ├── LICENSE ├── README.md ├── cobolt ├── __init__.py ├── model │ ├── __init__.py │ ├── clustering.py │ ├── cobolt.py │ └── coboltmodel.py ├── tests │ ├── __init__.py │ ├── test_clustering.py │ ├── test_data │ │ ├── joint_a │ │ │ ├── barcodes.tsv │ │ │ ├── counts.mtx │ │ │ └── features.tsv │ │ ├── joint_b │ │ │ ├── barcodes.tsv │ │ │ ├── counts.mtx │ │ │ └── features.tsv │ │ ├── single_a │ │ │ ├── barcodes.tsv │ │ │ ├── counts.mtx │ │ │ └── features.tsv │ │ └── single_b │ │ │ ├── barcodes.tsv │ │ │ ├── counts.mtx │ │ │ └── features.tsv │ ├── test_load_data.py │ └── test_model.py └── utils │ ├── __init__.py │ ├── data.py │ └── dataset.py ├── docs ├── README.md ├── multiome10X.py ├── tutorial.ipynb └── tutorial.py ├── setup.py └── summary.png /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/epurdom/cobolt/HEAD/.gitignore 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