├── .gitignore ├── .pylintrc ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── RAPIDpy ├── __init__.py ├── dataset.py ├── gis │ ├── __init__.py │ ├── centroid.py │ ├── lsm_grids │ │ ├── runoff_ecmwf_t1279_grid.nc │ │ ├── runoff_ecmwf_tco639_grid.nc │ │ └── runoff_era_t511_grid.nc │ ├── muskingum.py │ ├── network.py │ ├── taudem.py │ ├── voronoi.py │ ├── weight.py │ └── workflow.py ├── helper_functions.py ├── inflow │ ├── CreateInflowFileFromERA5Runoff.py │ ├── CreateInflowFileFromERAInterimRunoff.py │ ├── CreateInflowFileFromGriddedRunoff.py │ ├── CreateInflowFileFromLDASRunoff.py │ ├── CreateInflowFileFromWRFHydroRunoff.py │ ├── __init__.py │ └── lsm_rapid_process.py ├── pangaea │ ├── .pylintrc │ ├── .travis.yml │ ├── LICENSE │ ├── __init__.py │ ├── log.py │ ├── meta.py │ ├── read.py │ └── xlsm.py ├── postprocess │ ├── __init__.py │ ├── generate_return_periods.py │ ├── generate_seasonal_averages.py │ ├── goodness_of_fit.py │ └── merge.py ├── rapid.py └── utilities.py ├── README.md ├── appveyor.yml ├── docs ├── Makefile ├── conf.py ├── gis_stream_network.rst ├── gis_tools.rst ├── index.rst ├── installation.rst ├── lsm_inflow.rst ├── make.bat ├── postprocessing.rst ├── rapid_dataset.rst ├── rapid_to_gssha.rst └── running_rapid.rst ├── rapidpy_env.yml ├── readthedocs.yml ├── requirements.readthedocs.txt ├── setup.py └── tests ├── compare ├── Qinit_seasonal_avg_jan_1.csv ├── Qout_merge.nc ├── Qout_nasa_lis_3hr_20020830.nc ├── Qout_nasa_lis_3hr_20020830_CF.nc ├── Qout_nasa_lis_3hr_20020830_CF_no_lat_lon_z.nc ├── Qout_nasa_lis_3hr_20020830_original.nc ├── cf_goodness_of_fit_analysis.csv ├── cf_goodness_of_fit_analysis_1.csv ├── cf_timeseries.csv ├── cf_timeseries.ihg ├── cf_timeseries.xys ├── cf_timeseries_daily.csv ├── cf_timeseries_daily.ihg ├── cf_timeseries_daily.xys ├── cf_timeseries_daily_date.csv ├── cf_timeseries_daily_date.ihg ├── cf_timeseries_daily_date.xys ├── cf_timeseries_daily_date_tz.ihg ├── cf_timeseries_daily_tz.ihg ├── cf_timeseries_date.csv ├── cf_timeseries_date.ihg ├── cf_timeseries_date.xys ├── cf_timeseries_date_tz.ihg ├── cf_timeseries_tz.ihg ├── gage_rivid.csv ├── gage_streamflow.csv ├── gis │ ├── ark-ms │ │ ├── k.csv │ │ ├── rapid_connect.csv │ │ ├── riv_bas_id.csv │ │ ├── weight_cmip5.csv │ │ └── x.csv │ ├── m-s │ │ ├── comid_lat_lon_z.csv │ │ ├── k.csv │ │ ├── kfac.csv │ │ ├── rapid_connect.csv │ │ ├── riv_bas_id.csv │ │ ├── weight_wrf.csv │ │ └── x.csv │ ├── mendocino │ │ ├── k.csv │ │ ├── rapid_connect.csv │ │ ├── riv_bas_id.csv │ │ ├── weight_era5.csv │ │ └── x.csv │ ├── mendocino_nhdplus_catchment │ │ ├── rapid_connectivity_mendocino_sample.csv │ │ ├── weight_lis_land_fraction_mendocino_subset.csv │ │ └── weight_mendocino_era5_land_mask.csv │ ├── u-k │ │ ├── comid_lat_lon_z.csv │ │ ├── k.csv │ │ ├── kfac.csv │ │ ├── rapid_connect.csv │ │ ├── riv_bas_id.csv │ │ ├── weight_joules.csv │ │ ├── weight_lis.csv │ │ ├── x.csv │ │ └── x_drain.csv │ ├── uk-no_intersect │ │ └── weight_lis_no_intersect.csv │ └── x-x │ │ ├── comid_lat_lon_z.csv │ │ ├── k.csv │ │ ├── kfac.csv │ │ ├── kfac1.csv │ │ ├── kfac2.csv │ │ ├── qinit_erai_t511_3hr_20030121to20030122.csv │ │ ├── rapid_connect.csv │ │ ├── rapid_connect_nhd.csv │ │ ├── riv_bas_id.csv │ │ ├── weight_area.csv │ │ ├── weight_ecmwf_t1279.csv │ │ ├── weight_ecmwf_tco639.csv │ │ ├── weight_era_t159.csv │ │ ├── weight_era_t255.csv │ │ ├── weight_era_t511.csv │ │ ├── weight_gldas2.csv │ │ ├── weight_nldas.csv │ │ ├── weight_polygons.csv │ │ └── x.csv ├── goodness_of_fit_obs_sim.csv ├── goodness_of_fit_obs_sim.txt ├── inflow │ ├── Qout_erai_t511_3hr_20030121to20030122.nc │ ├── Qout_erai_t511_3hr_20030121to20030122_init.nc │ ├── m3_riv_bas_cmip5_cmip5_24hr_20010101to20010103.nc │ ├── m3_riv_bas_era5_era5_3hr_20190101to20190101.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_0.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_1.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_2.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_3.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_4.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_5.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_6.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_7.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_8.nc │ ├── m3_riv_bas_era_20cm_t159_3hr_20000129to20000130_9.nc │ ├── m3_riv_bas_erai_t255_3hr_20140820to20140821.nc │ ├── m3_riv_bas_erai_t511_24hr_19990109to19990110.nc │ ├── m3_riv_bas_erai_t511_3hr_20030121to20030122.nc │ ├── m3_riv_bas_met_office_joules_3hr_20080803to20080803.nc │ ├── m3_riv_bas_nasa_gldas2_3hr_20101231to20101231.nc │ ├── m3_riv_bas_nasa_lis_3hr_20110121to20110121.nc │ ├── m3_riv_bas_nasa_nldas_3hr_20030121to20030121.nc │ ├── m3_riv_bas_wrf_wrf_1hr_20080601to20080601.nc │ └── qinit_erai_t511_3hr_20030121to20030122.csv ├── new_timeseries_file.csv ├── original_timeseries-notime.csv ├── original_timeseries.csv ├── qinit_cf_rapid_qout.csv ├── qinit_original_rapid_qout.csv ├── rapid_namelist-GENERATE ├── rapid_namelist-GENERATE-NUMBERS ├── rapid_namelist-GENERATE-NUMBERS-FORCING ├── rapid_namelist-GENERATE-TIME ├── rapid_namelist-UPDATE ├── rapid_namelist-UPDATE-INVALID ├── return_periods_erai_t511_24hr_19800101to19861231.nc ├── return_periods_gumble_erai_t511_24hr_19800101to19861231.nc ├── return_periods_log_pearson_erai_t511_24hr_19800101to19861231.nc └── seasonal_averages_erai_t511_24hr_19800101to19861231.nc ├── data ├── Qout_erai_t511_24hr_19800101to19861231.nc ├── Qout_merge_3hr.nc ├── Qout_merge_6hr.nc ├── comid_lat_lon_z.csv ├── for_tot_id.csv ├── for_use_id.csv ├── gis │ ├── catchment.dbf │ ├── catchment.prj │ ├── catchment.shp │ ├── catchment.shx │ ├── flowline.dbf │ ├── flowline.prj │ ├── flowline.shp │ ├── flowline.shx │ ├── jamaica_dem.tif │ ├── m-s │ │ ├── catchment_subset.dbf │ │ ├── catchment_subset.prj │ │ ├── catchment_subset.shp │ │ ├── catchment_subset.shx │ │ ├── flowline_subset.dbf │ │ ├── flowline_subset.prj │ │ ├── flowline_subset.shp │ │ └── flowline_subset.shx │ ├── mendocino_nhdplus_catchment │ │ ├── NHDCat_mendocino_watershed_hopland_sample.cpg │ │ ├── NHDCat_mendocino_watershed_hopland_sample.dbf │ │ ├── NHDCat_mendocino_watershed_hopland_sample.prj │ │ ├── NHDCat_mendocino_watershed_hopland_sample.sbn │ │ ├── NHDCat_mendocino_watershed_hopland_sample.sbx │ │ ├── NHDCat_mendocino_watershed_hopland_sample.shp │ │ └── NHDCat_mendocino_watershed_hopland_sample.shx │ ├── test_catchments.cpg │ ├── test_catchments.dbf │ ├── test_catchments.prj │ ├── test_catchments.shp │ ├── test_catchments.shx │ ├── u-k │ │ ├── CatchmentSubset.dbf │ │ ├── CatchmentSubset.prj │ │ ├── CatchmentSubset.shp │ │ ├── CatchmentSubset.shx │ │ ├── DrainageLineSubset.dbf │ │ ├── DrainageLineSubset.prj │ │ ├── DrainageLineSubset.shp │ │ └── DrainageLineSubset.shx │ └── uk-no_intersect │ │ ├── Catchment_thames_drainID45390.dbf │ │ ├── Catchment_thames_drainID45390.prj │ │ ├── Catchment_thames_drainID45390.shp │ │ ├── Catchment_thames_drainID45390.shx │ │ └── rapid_connect_45390.csv ├── k.csv ├── lsm_grids │ ├── cmip5 │ │ └── conus_c5.ccsm4_rcp60_r1i1p1.daily.total_runoff.2001_subset.nc │ ├── era20cm │ │ ├── era_20cm_runoff_20000129_0.nc │ │ ├── era_20cm_runoff_20000129_1.nc │ │ ├── era_20cm_runoff_20000129_2.nc │ │ ├── era_20cm_runoff_20000129_3.nc │ │ ├── era_20cm_runoff_20000129_4.nc │ │ ├── era_20cm_runoff_20000129_5.nc │ │ ├── era_20cm_runoff_20000129_6.nc │ │ ├── era_20cm_runoff_20000129_7.nc │ │ ├── era_20cm_runoff_20000129_8.nc │ │ ├── era_20cm_runoff_20000129_9.nc │ │ ├── era_20cm_runoff_20000130_0.nc │ │ ├── era_20cm_runoff_20000130_1.nc │ │ ├── era_20cm_runoff_20000130_2.nc │ │ ├── era_20cm_runoff_20000130_3.nc │ │ ├── era_20cm_runoff_20000130_4.nc │ │ ├── era_20cm_runoff_20000130_5.nc │ │ ├── era_20cm_runoff_20000130_6.nc │ │ ├── era_20cm_runoff_20000130_7.nc │ │ ├── era_20cm_runoff_20000130_8.nc │ │ └── era_20cm_runoff_20000130_9.nc │ ├── era5 │ │ └── era5runoff.25km.20190101_mendocino_subset.nc │ ├── era5_land_mask │ │ └── era5_land-sea_mask_mendocino_subset.nc │ ├── erai24 │ │ ├── 19990109_erai_runoff.grib.nc │ │ └── 19990110_erai_runoff.grib.nc │ ├── erai3 │ │ ├── 20030121_erai3h_ro.nc │ │ └── 20030122_erai3h_ro.nc │ ├── erai3t255 │ │ ├── era_interim_runoff_20140820.nc │ │ └── era_interim_runoff_20140821.nc │ ├── gldas2 │ │ ├── GLDAS_NOAH025_3H.A20101231.0000.020.nc4 │ │ └── GLDAS_NOAH025_3H.A20101231.0300.020.nc4 │ ├── joules │ │ ├── ukv_test.runoff.20080803_00.nc │ │ ├── ukv_test.runoff.20080803_01.nc │ │ ├── ukv_test.runoff.20080803_02.nc │ │ ├── ukv_test.runoff.20080803_03.nc │ │ ├── ukv_test.runoff.20080803_04.nc │ │ ├── ukv_test.runoff.20080803_05.nc │ │ ├── ukv_test.runoff.20080803_06.nc │ │ ├── ukv_test.runoff.20080803_07.nc │ │ ├── ukv_test.runoff.20080803_08.nc │ │ ├── ukv_test.runoff.20080803_09.nc │ │ ├── ukv_test.runoff.20080803_10.nc │ │ ├── ukv_test.runoff.20080803_11.nc │ │ ├── ukv_test.runoff.20080803_12.nc │ │ ├── ukv_test.runoff.20080803_13.nc │ │ ├── ukv_test.runoff.20080803_14.nc │ │ ├── ukv_test.runoff.20080803_15.nc │ │ ├── ukv_test.runoff.20080803_16.nc │ │ ├── ukv_test.runoff.20080803_17.nc │ │ ├── ukv_test.runoff.20080803_18.nc │ │ ├── ukv_test.runoff.20080803_19.nc │ │ ├── ukv_test.runoff.20080803_20.nc │ │ ├── ukv_test.runoff.20080803_21.nc │ │ ├── ukv_test.runoff.20080803_22.nc │ │ └── ukv_test.runoff.20080803_23.nc │ ├── lis │ │ ├── LIS_HIST_201101210000.d01.nc │ │ ├── LIS_HIST_201101210100.d01.nc │ │ ├── LIS_HIST_201101210200.d01.nc │ │ ├── LIS_HIST_201101210300.d01.nc │ │ ├── LIS_HIST_201101210400.d01.nc │ │ ├── LIS_HIST_201101210500.d01.nc │ │ ├── LIS_HIST_201101210600.d01.nc │ │ ├── LIS_HIST_201101210700.d01.nc │ │ ├── LIS_HIST_201101210800.d01.nc │ │ ├── LIS_HIST_201101210900.d01.nc │ │ ├── LIS_HIST_201101211000.d01.nc │ │ ├── LIS_HIST_201101211100.d01.nc │ │ ├── LIS_HIST_201101211200.d01.nc │ │ ├── LIS_HIST_201101211300.d01.nc │ │ ├── LIS_HIST_201101211400.d01.nc │ │ ├── LIS_HIST_201101211500.d01.nc │ │ ├── LIS_HIST_201101211600.d01.nc │ │ ├── LIS_HIST_201101211700.d01.nc │ │ ├── LIS_HIST_201101211800.d01.nc │ │ ├── LIS_HIST_201101211900.d01.nc │ │ ├── LIS_HIST_201101212000.d01.nc │ │ ├── LIS_HIST_201101212100.d01.nc │ │ ├── LIS_HIST_201101212200.d01.nc │ │ └── LIS_HIST_201101212300.d01.nc │ ├── lis_land_mask │ │ └── lisglobalmask557ww_mendocino_subset.nc │ ├── nldas2 │ │ ├── NLDAS_VIC0125_H.A20030121.2100.002.nc │ │ ├── NLDAS_VIC0125_H.A20030121.2200.002.nc │ │ └── NLDAS_VIC0125_H.A20030121.2300.002.nc │ └── wrf │ │ ├── diffro_d02_20080601010000.nc │ │ ├── diffro_d02_20080601020000.nc │ │ ├── diffro_d02_20080601030000.nc │ │ ├── diffro_d02_20080601040000.nc │ │ ├── diffro_d02_20080601050000.nc │ │ ├── diffro_d02_20080601060000.nc │ │ ├── diffro_d02_20080601070000.nc │ │ ├── diffro_d02_20080601080000.nc │ │ ├── diffro_d02_20080601090000.nc │ │ ├── diffro_d02_20080601100000.nc │ │ ├── diffro_d02_20080601110000.nc │ │ ├── diffro_d02_20080601120000.nc │ │ 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