├── .gitignore ├── .zenodo.json ├── LICENSE ├── Makefile ├── README.md ├── code ├── alternate_models.R ├── bird_example_data.R └── cleaning_zooplankton_data.R ├── compiled_paper ├── full_document.pdf ├── full_document.tex ├── prior_submission.tex ├── supplemental_code.R └── supplemental_info.zip ├── data ├── bird_move.csv ├── bird_move_global.csv ├── madisonlakeszoopoldnet.csv └── zooplankton_example.csv ├── figures ├── Fig1.pdf ├── Fig10.pdf ├── Fig11.pdf ├── Fig12.pdf ├── Fig13.pdf ├── Fig14.pdf ├── Fig15.pdf ├── Fig16.pdf ├── Fig17.pdf ├── Fig18.pdf ├── Fig19.pdf ├── Fig2.pdf ├── Fig20.pdf ├── Fig3.pdf ├── Fig4.pdf ├── Fig5.pdf ├── Fig6.pdf ├── Fig7.pdf ├── Fig8.pdf ├── Fig9.pdf └── temp_growth_example.svg ├── mixed-effect-gams.Rproj └── paper_sections ├── .gitignore ├── 01-intro.Rmd ├── 02-gams.Rmd ├── 03-hierarchical_gams.Rmd ├── 04-examples.Rmd ├── 05-computational_and_statistical_issues.Rmd ├── bibliography.bib ├── full_document.Rmd ├── peerj.csl ├── preamble.sty └── wlpeerj.cls 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