├── LICENSE ├── README.md ├── assets ├── example1_roundabout.png ├── example2_roundabout.png ├── example3_roundabout.png ├── test_test1_roundabout.png └── test_test2_roundabout.png ├── bin ├── divide.py ├── groups.py └── karyotype.py ├── conf ├── background.black.conf ├── background.white.conf ├── brewer.all.conf ├── brewer.conf ├── colors.brewer.conf ├── colors.conf ├── colors.hsv.conf ├── colors.ucsc.conf ├── colors_fonts_patterns.conf ├── fonts.conf ├── gddiag.conf ├── housekeeping.conf ├── image.black.conf ├── image.conf ├── image.generic.conf ├── patterns.conf ├── patterns.svg.conf ├── request-key.conf └── template.conf ├── main.nf ├── modules ├── amrfinder.nf ├── bedtools.nf ├── blast.nf ├── circos.nf ├── plasmidfinder.nf ├── prokka.nf ├── pygenomeviz.nf └── roundabout.nf ├── nextflow.config └── test ├── example1.fa ├── example2.fa ├── example3.fa └── test.fa /LICENSE: -------------------------------------------------------------------------------- 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