├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── LICENSE ├── README.md ├── c └── kmers.c ├── pyproject.toml ├── setup.cfg ├── setup.py ├── src └── trio_binning │ ├── classify_by_alignment.py │ ├── classify_by_kmers.py │ ├── find_unique_kmers.py │ ├── kmers.py │ ├── kmers_c_test.py │ └── seq.py └── tests ├── data ├── hapA.fastq ├── hapA.txt ├── hapB.txt ├── test.ccs.fastq.gz ├── test.fa └── test.fastq ├── test_classify_by_kmers.py ├── test_kmers.py └── test_seq.py /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/esrice/trio_binning/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/esrice/trio_binning/HEAD/.gitignore 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