├── LICENSE ├── README.md ├── code ├── .gitingore ├── collab_notebook │ ├── .gitignore │ └── functional_enrichment.ipynb ├── get_gene_list.py ├── go_analysis.py ├── gsea.py ├── import_libraries.py └── pathway_analysis.py ├── data ├── .gitignore └── skeletal_muscle.csv └── images ├── .gitignore ├── GO1.png ├── GO2.jpg ├── GO3.jpg ├── GO4.jpg ├── gsea.jpg ├── pathway1.jpg └── pathway2.jpg /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/README.md -------------------------------------------------------------------------------- /code/.gitingore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /code/collab_notebook/.gitignore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /code/collab_notebook/functional_enrichment.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/collab_notebook/functional_enrichment.ipynb -------------------------------------------------------------------------------- /code/get_gene_list.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/get_gene_list.py -------------------------------------------------------------------------------- /code/go_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/go_analysis.py -------------------------------------------------------------------------------- /code/gsea.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/gsea.py -------------------------------------------------------------------------------- /code/import_libraries.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/import_libraries.py -------------------------------------------------------------------------------- /code/pathway_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/code/pathway_analysis.py -------------------------------------------------------------------------------- /data/.gitignore: -------------------------------------------------------------------------------- 1 | da 2 | -------------------------------------------------------------------------------- /data/skeletal_muscle.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/data/skeletal_muscle.csv -------------------------------------------------------------------------------- /images/.gitignore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /images/GO1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/GO1.png -------------------------------------------------------------------------------- /images/GO2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/GO2.jpg -------------------------------------------------------------------------------- /images/GO3.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/GO3.jpg -------------------------------------------------------------------------------- /images/GO4.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/GO4.jpg -------------------------------------------------------------------------------- /images/gsea.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/gsea.jpg -------------------------------------------------------------------------------- /images/pathway1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/pathway1.jpg -------------------------------------------------------------------------------- /images/pathway2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evanpeikon/functional_enrichment_analysis/HEAD/images/pathway2.jpg --------------------------------------------------------------------------------