├── 10X_spoof.pl ├── BC_A.txt ├── BC_B.txt ├── BC_C.txt ├── BC_D.txt ├── LICENSE ├── README.md ├── barcode_makeWhitelist.sh ├── compile.sh ├── demult_fastq.cpp ├── ema_16BC_revert.sh ├── ema_align.sge.sh └── ema_prep.sh /10X_spoof.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/10X_spoof.pl -------------------------------------------------------------------------------- /BC_A.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/BC_A.txt -------------------------------------------------------------------------------- /BC_B.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/BC_B.txt -------------------------------------------------------------------------------- /BC_C.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/BC_C.txt -------------------------------------------------------------------------------- /BC_D.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/BC_D.txt -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/README.md -------------------------------------------------------------------------------- /barcode_makeWhitelist.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/barcode_makeWhitelist.sh -------------------------------------------------------------------------------- /compile.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/compile.sh -------------------------------------------------------------------------------- /demult_fastq.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/demult_fastq.cpp -------------------------------------------------------------------------------- /ema_16BC_revert.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/ema_16BC_revert.sh -------------------------------------------------------------------------------- /ema_align.sge.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/ema_align.sge.sh -------------------------------------------------------------------------------- /ema_prep.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/evolgenomics/haplotagging/HEAD/ema_prep.sh --------------------------------------------------------------------------------