├── .gitignore ├── .gitmodules ├── CHANGELOG.md ├── LICENSE.txt ├── README.md ├── TODO.txt ├── ajax ├── delete_paper.php ├── ena_get_project.php ├── geo_get_project.php ├── get_bash.php ├── java_download_xml.php ├── lookup_pmid.php ├── search_typeahead.php ├── send_file.php ├── sra_get_datasets.php ├── sra_get_project.php └── write_bash.php ├── backups └── backup_command.txt ├── conf ├── labrador_apache.conf ├── labrador_config.php.example ├── labrador_database.sql ├── labrador_database_v0.1_to_v0.2.sql └── sendmail_config.sh.example ├── css ├── bootstrap-responsive.css ├── bootstrap-responsive.min.css ├── bootstrap.css ├── bootstrap.min.css ├── responsive.css └── styles.css ├── datasets.php ├── documentation ├── index.php └── labrador_manual.md ├── download_file.php ├── files.php ├── img ├── glyphicons-halflings-white.png ├── glyphicons-halflings.png ├── labrador_logo.png ├── labrador_logo_tiny.png ├── puppy.jpg └── screencast_thumb.png ├── includes ├── PHP_Markdown_Lib_1.4.0 │ ├── License.md │ ├── Michelf │ │ ├── Markdown.inc.php │ │ ├── Markdown.php │ │ ├── MarkdownExtra.inc.php │ │ ├── MarkdownExtra.php │ │ ├── MarkdownInterface.inc.php │ │ └── MarkdownInterface.php │ ├── Readme.md │ ├── Readme.php │ └── composer.json ├── auth.php ├── datatables │ ├── css │ │ ├── dataTables.tableTools.css │ │ ├── dataTables.tableTools.min.css │ │ ├── jquery.dataTables.css │ │ ├── jquery.dataTables.min.css │ │ └── jquery.dataTables_themeroller.css │ ├── dataTables.bootstrap.css │ ├── dataTables.bootstrap.js │ ├── images │ │ ├── Sorting icons.psd │ │ ├── collection.png │ │ ├── collection_hover.png │ │ ├── copy.png │ │ ├── copy_hover.png │ │ ├── csv.png │ │ ├── csv_hover.png │ │ ├── favicon.ico │ │ ├── pdf.png │ │ ├── pdf_hover.png │ │ ├── print.png │ │ ├── print_hover.png │ │ ├── psd │ │ │ ├── collection.psd │ │ │ ├── copy document.psd │ │ │ ├── file_types.psd │ │ │ └── printer.psd │ │ ├── sort_asc.png │ │ ├── sort_asc_disabled.png │ │ ├── sort_both.png │ │ ├── sort_desc.png │ │ ├── sort_desc_disabled.png │ │ ├── xls.png │ │ └── xls_hover.png │ ├── jquery.dataTables.min.css │ ├── jquery.dataTables.min.js │ ├── js │ │ ├── dataTables.tableTools.js │ │ ├── dataTables.tableTools.min.js │ │ ├── jquery.dataTables.js │ │ ├── jquery.dataTables.min.js │ │ └── jquery.js │ └── swf │ │ ├── copy_csv_xls.swf │ │ └── copy_csv_xls_pdf.swf ├── footer.php ├── functions.php ├── header.php ├── javascript.php ├── jdownload │ ├── createxml.php │ ├── doc │ │ ├── CHANGELOG.TXT │ │ ├── README.TXT │ │ └── pdf │ │ │ └── jdownload-manual-en.pdf │ ├── download.dtd │ ├── download.xml │ ├── index.html │ ├── jdownload.jar │ └── sample.zip └── start.php ├── index.php ├── js ├── .jshintrc ├── bootstrap.js ├── bootstrap.min.js ├── datasets.js ├── files.js ├── global.js ├── home.js ├── jquery-1.8.3.min.js ├── jquery.cookie.js ├── jquery.iframe-auto-height.plugin.1.9.3.min.js ├── jquery.validate.min.js ├── processing.js ├── project.js ├── reports.js └── stupidtable.min.js ├── processing.php ├── 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