├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── coords.R ├── embed.R ├── som.R └── utils.R ├── README.md ├── inst └── CITATION ├── man ├── ClusterPalette.Rd ├── EmbedSOM.Rd ├── ExprColors.Rd ├── ExpressionGradient.Rd ├── ExpressionPalette.Rd ├── GQTSOM.Rd ├── GraphCoords.Rd ├── Initialize_PCA.Rd ├── MSTCoords.Rd ├── MapDataToCodes.Rd ├── NormalizeColor.Rd ├── PlotData.Rd ├── PlotDefault.Rd ├── PlotEmbed.Rd ├── PlotGG.Rd ├── PlotId.Rd ├── RandomMap.Rd ├── SOM.Rd ├── UMAPCoords.Rd ├── UMatrixCoords.Rd ├── kMeansMap.Rd ├── kNNCoords.Rd ├── tSNECoords.Rd └── uwotCoords.Rd ├── pack_cran.sh ├── src ├── .clang-format ├── distfs.h ├── embed.cpp ├── som.cpp ├── som.h ├── style.sh └── use_intrins.h └── vignettes ├── .gitignore └── UsingEmbedSOM.Rmd /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/exaexa/EmbedSOM/HEAD/DESCRIPTION -------------------------------------------------------------------------------- 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