├── Chapter5_HipHop_2D3Dregistration.pdf ├── README.md ├── Registration_examples.pptx ├── demo_images └── Intro_registration.png ├── input_data └── HOPE_Test │ ├── 3D_models │ └── ready │ │ ├── HOPE_Test_Cup.stl │ │ └── HOPE_Test_Stem.stl │ ├── analysis │ ├── calibrations │ │ └── HOPE_Test_camera_intrinsic_parameters.txt │ └── registration │ │ └── HipHop │ │ ├── Initialization │ │ ├── init_HOPE_Test_SC_g1_036_Cup.csv │ │ ├── init_HOPE_Test_SC_g1_036_Stem.csv │ │ ├── init_HOPE_Test_SC_g1_039_Cup.csv │ │ └── init_HOPE_Test_SC_g1_039_Stem.csv │ │ └── OptInfo │ │ ├── DRRs │ │ ├── SC_g1_036_InitialGuess_Stem.tif │ │ ├── SC_g1_036_InitializationPose_Stem.tif │ │ └── SC_g1_036_Stem_Optimizer_GN_ESCH.tif │ │ └── OptOutcomes_SC_g1_036_Stem.txt │ └── fixed_images │ ├── HipHopReg │ ├── ImgParam │ │ ├── ImgParam_SC_g1_036_Cup.npy │ │ ├── ImgParam_SC_g1_036_Cup.txt │ │ ├── ImgParam_SC_g1_036_Stem.npy │ │ ├── ImgParam_SC_g1_036_Stem.txt │ │ ├── ImgParam_SC_g1_039_Cup.npy │ │ ├── ImgParam_SC_g1_039_Cup.txt │ │ ├── ImgParam_SC_g1_039_Stem.npy │ │ └── ImgParam_SC_g1_039_Stem.txt │ ├── Masks │ │ ├── SC_g1_036_Cup_mask.mha │ │ ├── SC_g1_036_Cup_mask.tif │ │ ├── SC_g1_036_Stem_mask.mha │ │ ├── SC_g1_036_Stem_mask.tif │ │ ├── SC_g1_039_Cup_mask.mha │ │ ├── SC_g1_039_Cup_mask.tif │ │ ├── SC_g1_039_Stem_mask.mha │ │ └── SC_g1_039_Stem_mask.tif │ ├── SC_g1_036_denoised.mha │ ├── SC_g1_036_denoised.tif │ ├── SC_g1_039_denoised.mha │ └── SC_g1_039_denoised.tif │ ├── SC_g1_036.tif │ └── SC_g1_039.tif ├── modules ├── HipHop.py ├── MetricsModule.py ├── OptimizersModule.py ├── ProjectorsModule.py ├── ROI_module.py ├── ReadWriteImageModule.py └── RigidMotionModule.py ├── tests ├── Register_CT_pelvis.py └── Register_femoral_implant.py └── wrapped_modules ├── SiddonGpuPy.cp36-win_amd64.pyd └── nlopt-2.4.2-dll64_2nd ├── COPYING ├── COPYRIGHT ├── NEWS ├── README ├── README-WINDOWS ├── __pycache__ └── nlopt.cpython-36.pyc ├── _nlopt.cp36-win_amd64.pyd ├── build └── temp.win-amd64-3.6 │ └── Release │ ├── _nlopt.cp36-win_amd64.exp │ ├── _nlopt.cp36-win_amd64.lib │ └── nlopt-python.obj ├── libnlopt-0.def ├── libnlopt-0.dll ├── libnlopt-0.exp ├── libnlopt-0.lib ├── matlab ├── NLOPT_AUGLAG.m ├── NLOPT_AUGLAG_EQ.m ├── NLOPT_GD_MLSL.m ├── NLOPT_GD_MLSL_LDS.m ├── NLOPT_GD_STOGO.m ├── NLOPT_GD_STOGO_RAND.m ├── NLOPT_GN_CRS2_LM.m ├── NLOPT_GN_DIRECT.m ├── NLOPT_GN_DIRECT_L.m ├── NLOPT_GN_DIRECT_L_NOSCAL.m ├── NLOPT_GN_DIRECT_L_RAND.m ├── NLOPT_GN_DIRECT_L_RAND_NOSCAL.m ├── NLOPT_GN_DIRECT_NOSCAL.m ├── NLOPT_GN_ESCH.m ├── NLOPT_GN_ISRES.m ├── NLOPT_GN_MLSL.m ├── NLOPT_GN_MLSL_LDS.m ├── NLOPT_GN_ORIG_DIRECT.m ├── NLOPT_GN_ORIG_DIRECT_L.m ├── NLOPT_G_MLSL.m ├── NLOPT_G_MLSL_LDS.m ├── NLOPT_LD_AUGLAG.m ├── NLOPT_LD_AUGLAG_EQ.m ├── NLOPT_LD_CCSAQ.m ├── NLOPT_LD_LBFGS.m ├── NLOPT_LD_LBFGS_NOCEDAL.m ├── NLOPT_LD_MMA.m ├── NLOPT_LD_SLSQP.m ├── NLOPT_LD_TNEWTON.m ├── NLOPT_LD_TNEWTON_PRECOND.m ├── NLOPT_LD_TNEWTON_PRECOND_RESTART.m ├── NLOPT_LD_TNEWTON_RESTART.m 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