├── .dockerignore ├── .gitattributes ├── .github ├── ISSUE_TEMPLATE.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── deploy.yml │ ├── docs.yml │ ├── lint.yml │ ├── nightly.yml.disabled │ └── test.yml ├── .gitignore ├── .pyre_configuration ├── CHANGELOG.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── docs ├── contributing.md ├── framework_topics │ ├── development │ │ └── logging.md │ ├── mcmc_inference │ │ ├── ancestral_metropolis_hastings.md │ │ ├── custom_inference │ │ │ ├── block_inference.md │ │ │ ├── compositional_inference.md │ │ │ ├── custom_proposers.md │ │ │ ├── programmable_inference.md │ │ │ └── transforms.md │ │ ├── hamiltonian_monte_carlo.md │ │ ├── mcmc_inference.md │ │ ├── newtonian_monte_carlo.md │ │ ├── no_u_turn_sampler.md │ │ ├── random_walk.md │ │ └── uniform_metropolis_hastings.md │ ├── model_evaluation │ │ ├── arviz-autocorrelation-plot.png │ │ ├── arviz-summary.png │ │ ├── arviz-trace-plot.png │ │ ├── diagnostics.md │ │ ├── model_comparison.md │ │ └── posterior_predictive_checks.md │ ├── variational_inference.md │ └── world.md ├── mdx.md ├── overview │ ├── analysis │ │ ├── analysis.mdx │ │ ├── mcmc_autocorr.json │ │ ├── mcmc_trace.json │ │ └── posterior_rate_dynamic.json │ ├── api │ │ └── api.md │ ├── beanstalk │ │ ├── beanstalk.md │ │ └── image.png │ ├── inference │ │ └── inference.md │ ├── installation │ │ └── installation.md │ ├── modeling │ │ └── modeling.md │ ├── overview.ipynb │ ├── packages │ │ └── packages.md │ ├── quick_start │ │ ├── posterior_rate_static.json │ │ ├── prior_exponential.json │ │ ├── prior_poisson.json │ │ └── quick_start.mdx │ └── why_bean_machine │ │ ├── prior_exponential.json │ │ ├── prior_poisson_intro.json │ │ └── why_bean_machine.mdx └── tutorials │ └── listing.md ├── minibmg ├── ad │ ├── num2.h │ ├── num3.h │ ├── number.h │ ├── real.h │ ├── reverse.h │ ├── traced.cpp │ └── traced.h ├── distribution │ ├── bernoulli.h │ ├── beta.h │ ├── distribution.h │ ├── exponential.h │ ├── half_normal.h │ ├── log_transform.h │ ├── normal.h │ ├── sigmoid_transform.h │ └── transformation.h ├── eval.cpp ├── eval.h ├── eval_error.h ├── fluid_factory.cpp ├── fluid_factory.h ├── graph.cpp ├── graph.h ├── graph_factory.cpp ├── graph_factory.h ├── graph_properties │ ├── container.cpp │ ├── container.h │ ├── observations_by_node.cpp │ ├── observations_by_node.h │ ├── out_nodes.cpp │ ├── out_nodes.h │ ├── unobserved_samples.cpp │ └── unobserved_samples.h ├── inference │ ├── global_state.cpp │ ├── global_state.h │ ├── hmc_world.cpp │ ├── hmc_world.h │ ├── mle_inference.cpp │ └── mle_inference.h ├── json.cpp ├── node.cpp ├── node.h ├── pretty.cpp ├── pretty.h ├── rewriters │ ├── constant_fold.cpp │ ├── constant_fold.h │ ├── dedag.cpp │ ├── dedag.h │ ├── dedup.cpp │ ├── dedup.h │ ├── localopt.cpp │ ├── localopt.h │ ├── rewrite_adapter.h │ ├── update_children.cpp │ └── update_children.h ├── tests │ ├── ad │ │ ├── num2_test.cpp │ │ ├── num3_test.cpp │ │ ├── real_test.cpp │ │ ├── realperf_test.cpp │ │ ├── reverse_test.cpp │ │ └── traced_test.cpp │ ├── distribution │ │ ├── log_prob_test.cpp │ │ └── transformation_test.cpp │ ├── eval_test.cpp │ ├── fluid_factory_test.cpp │ ├── graph_properties │ │ ├── container_test.cpp │ │ ├── observations_by_node_test.cpp │ │ └── out_nodes_test.cpp │ ├── inference │ │ ├── mle_inference_test.cpp │ │ └── nuts_test.cpp │ ├── json_test.cpp │ ├── minibmg_test.cpp │ ├── rewriters │ │ ├── dedag_test.cpp │ │ └── localopt_test.cpp │ ├── test_utils.cpp │ ├── test_utils.h │ └── topological_test.cpp └── topological.h ├── pyproject.toml ├── setup.cfg ├── setup.py ├── src └── beanmachine │ ├── __init__.py │ ├── graph │ ├── README.md │ ├── cavi.cpp │ ├── distribution │ │ ├── bernoulli.cpp │ │ ├── bernoulli.h │ │ ├── bernoulli_logit.cpp │ │ ├── bernoulli_logit.h │ │ ├── bernoulli_noisy_or.cpp │ │ ├── bernoulli_noisy_or.h │ │ ├── beta.cpp │ │ ├── beta.h │ │ ├── bimixture.cpp │ │ ├── bimixture.h │ │ ├── binomial.cpp │ │ ├── binomial.h │ │ ├── categorical.cpp │ │ ├── categorical.h │ │ ├── cauchy.cpp │ │ ├── cauchy.h │ │ ├── dirichlet.cpp │ │ ├── dirichlet.h │ │ ├── distribution.cpp │ │ ├── distribution.h │ │ ├── dummy_marginal.cpp │ │ ├── dummy_marginal.h │ │ ├── flat.cpp │ │ ├── flat.h │ │ ├── gamma.cpp │ │ ├── gamma.h │ │ ├── geometric.cpp │ │ ├── geometric.h │ │ ├── half_cauchy.cpp │ │ ├── half_cauchy.h │ │ ├── half_normal.cpp │ │ ├── half_normal.h │ │ ├── lkj_cholesky.cpp │ │ ├── lkj_cholesky.h │ │ ├── log_normal.cpp │ │ ├── log_normal.h │ │ ├── multivariate_normal.cpp │ │ ├── multivariate_normal.h │ │ ├── normal.cpp │ │ ├── normal.h │ │ ├── poisson.cpp │ │ ├── poisson.h │ │ ├── product.cpp │ │ ├── product.h │ │ ├── student_t.cpp │ │ ├── student_t.h │ │ ├── tabular.cpp │ │ ├── tabular.h │ │ └── tests │ │ │ ├── bernoulli_logit_test.cpp │ │ │ ├── bernoulli_noisy_or_test.cpp │ │ │ ├── beta_test.cpp │ │ │ ├── bimixture_test.cpp │ │ │ ├── binomial_test.cpp │ │ │ ├── categorical_test.cpp │ │ │ ├── cauchy_test.cpp │ │ │ ├── dirichlet_test.cpp │ │ │ ├── distribution_test.cpp │ │ │ ├── flat_test.cpp │ │ │ ├── gamma_test.cpp │ │ │ ├── geometric_test.cpp │ │ │ ├── half_cauchy_test.cpp │ │ │ ├── half_normal_test.cpp │ │ │ ├── lkj_cholesky_test.cpp │ │ │ ├── log_normal_test.cpp │ │ │ ├── multivariate_normal_test.cpp │ │ │ ├── normal_test.cpp │ │ │ ├── poisson_test.cpp │ │ │ ├── product_test.cpp │ │ │ └── student_t_test.cpp │ ├── double_matrix.cpp │ ├── double_matrix.h │ ├── factor │ │ ├── exp_product.cpp │ │ ├── exp_product.h │ │ ├── factor.cpp │ │ ├── factor.h │ │ └── tests │ │ │ └── exp_product_test.cpp │ ├── fluid │ │ ├── fluid.cpp │ │ ├── fluid.h │ │ └── tests │ │ │ └── fluid_test.cpp │ ├── gibbs.cpp │ ├── global │ │ ├── global_mh.cpp │ │ ├── global_mh.h │ │ ├── global_state.cpp │ │ ├── global_state.h │ │ ├── hmc.cpp │ │ ├── hmc.h │ │ ├── nuts.cpp │ │ ├── nuts.h │ │ ├── proposer │ │ │ ├── global_proposer.h │ │ │ ├── hmc_proposer.cpp │ │ │ ├── hmc_proposer.h │ │ │ ├── hmc_util.cpp │ │ │ ├── hmc_util.h │ │ │ ├── nuts_proposer.cpp │ │ │ ├── nuts_proposer.h │ │ │ ├── random_walk_proposer.cpp │ │ │ ├── random_walk_proposer.h │ │ │ └── tests │ │ │ │ └── hmc_util_test.cpp │ │ ├── random_walk.cpp │ │ ├── random_walk.h │ │ ├── tests │ │ │ ├── conjugate_util_test.cpp │ │ │ ├── conjugate_util_test.h │ │ │ ├── global_state_test.cpp │ │ │ ├── hmc_mass_matrix_test.cpp │ │ │ ├── hmc_no_warmup_test.cpp │ │ │ ├── hmc_step_size_test.cpp │ │ │ ├── nuts_mass_matrix_test.cpp │ │ │ ├── nuts_matrix_test.cpp │ │ │ ├── nuts_multinomial_test.cpp │ │ │ ├── nuts_test.cpp │ │ │ ├── random_walk_test.cpp │ │ │ └── util_test.cpp │ │ ├── util.cpp │ │ └── util.h │ ├── graph.cpp │ ├── graph.h │ ├── graph.pyi │ ├── graph_stats.cpp │ ├── marginalization │ │ ├── marginalization_extensional.cpp │ │ ├── marginalization_extensional.h │ │ ├── marginalization_extensional_test.cpp │ │ ├── marginalized_graph.cpp │ │ ├── marginalized_graph.h │ │ ├── marginalized_graph_test.cpp │ │ ├── subgraph.cpp │ │ ├── subgraph.h │ │ └── subgraph_test.cpp │ ├── mh.cpp │ ├── mh.h │ ├── nmc.cpp │ ├── nmc.h │ ├── nmc_stepper.h │ ├── operator │ │ ├── backward.cpp │ │ ├── controlop.cpp │ │ ├── controlop.h │ │ ├── gradient.cpp │ │ ├── linalgop.cpp │ │ ├── linalgop.h │ │ ├── multiaryop.cpp │ │ ├── multiaryop.h │ │ ├── operator.cpp │ │ ├── operator.h │ │ ├── register.cpp │ │ ├── stochasticop.cpp │ │ ├── stochasticop.h │ │ ├── tests │ │ │ ├── gradient_test.cpp │ │ │ └── operator_test.cpp │ │ ├── unaryop.cpp │ │ └── unaryop.h │ ├── out_nodes_reflexive_transitive_closure.cpp │ ├── out_nodes_reflexive_transitive_closure.h │ ├── perf_report.cpp │ ├── profiler.cpp │ ├── profiler.h │ ├── proposer │ │ ├── beta.cpp │ │ ├── beta.h │ │ ├── default_initializer.cpp │ │ ├── default_initializer.h │ │ ├── delta.h │ │ ├── from_probability_to_dirichlet_proposer_adapter.cpp │ │ ├── from_probability_to_dirichlet_proposer_adapter.h │ │ ├── gamma.cpp │ │ ├── gamma.h │ │ ├── mixture.cpp │ │ ├── mixture.h │ │ ├── nmc_proposer.cpp │ │ ├── normal.cpp │ │ ├── normal.h │ │ ├── proposer.h │ │ ├── tests │ │ │ ├── gamma_test.cpp │ │ │ ├── mixture_test.cpp │ │ │ └── trunc_cauchy_test.cpp │ │ ├── trunc_cauchy.cpp │ │ └── trunc_cauchy.h │ ├── pybindings.cpp │ ├── pybindings.h │ ├── rejection.cpp │ ├── stepper │ │ ├── single_site │ │ │ ├── default_single_site_stepping_method.cpp │ │ │ ├── default_single_site_stepping_method.h │ │ │ ├── nmc_dirichlet_beta_single_site_stepping_method.cpp │ │ │ ├── nmc_dirichlet_beta_single_site_stepping_method.h │ │ │ ├── nmc_dirichlet_gamma_single_site_stepping_method.cpp │ │ │ ├── nmc_dirichlet_gamma_single_site_stepping_method.h │ │ │ ├── nmc_scalar_single_site_stepping_method.cpp │ │ │ ├── nmc_scalar_single_site_stepping_method.h │ │ │ ├── sequential_single_site_stepper.cpp │ │ │ ├── sequential_single_site_stepper.h │ │ │ ├── single_site_stepper.h │ │ │ └── single_site_stepping_method.h │ │ ├── stepper.cpp │ │ └── stepper.h │ ├── support.cpp │ ├── support.h │ ├── tests │ │ ├── cavi_test.cpp │ │ ├── graph_stat_test.cpp │ │ ├── graph_test.cpp │ │ ├── nmc_test.cpp │ │ ├── out_nodes_reflexive_transitive_closure_test.cpp │ │ ├── profiler_test.cpp │ │ ├── rejection_test.cpp │ │ ├── support_test.cpp │ │ ├── testing_util_test.cpp │ │ ├── testing_util_test.h │ │ └── util_test.cpp │ ├── third-party │ │ └── nameof.h │ ├── to_dot.cpp │ ├── transform │ │ ├── logtransform.cpp │ │ ├── sigmoidtransform.cpp │ │ ├── transform.h │ │ └── transform_test.cpp │ ├── transformation.h │ ├── util.cpp │ └── util.h │ ├── minibm.py │ ├── ppl │ ├── __init__.py │ ├── compiler │ │ ├── README.md │ │ ├── __init__.py │ │ ├── ast_patterns.py │ │ ├── ast_tools.py │ │ ├── beanstalk_common.py │ │ ├── bm_graph_builder.py │ │ ├── bm_to_bmg.py │ │ ├── bmg_node_types.py │ │ ├── bmg_nodes.py │ │ ├── bmg_requirements.py │ │ ├── bmg_types.py │ │ ├── broadcaster.py │ │ ├── copy_and_replace.py │ │ ├── copy_transformer.py │ │ ├── devectorizer_transformer.py │ │ ├── error_report.py │ │ ├── execution_context.py │ │ ├── fix_additions.py │ │ ├── fix_arithmetic.py │ │ ├── fix_beta_conjugate_prior.py │ │ ├── fix_bool_arithmetic.py │ │ ├── fix_bool_comparisons.py │ │ ├── fix_logsumexp.py │ │ ├── fix_matrix_scale.py │ │ ├── fix_multiary_ops.py │ │ ├── fix_normal_conjugate_prior.py │ │ ├── fix_observations.py │ │ ├── fix_observe_true.py │ │ ├── fix_problem.py │ │ ├── fix_problems.py │ │ ├── fix_requirements.py │ │ ├── fix_transpose.py │ │ ├── fix_unsupported.py │ │ ├── gen_bm_python.py │ │ ├── gen_bmg_cpp.py │ │ ├── gen_bmg_graph.py │ │ ├── gen_bmg_python.py │ │ ├── gen_builder.py │ │ ├── gen_dot.py │ │ ├── gen_mini.py │ │ ├── graph_labels.py │ │ ├── internal_error.py │ │ ├── lattice_typer.py │ │ ├── patterns.py │ │ ├── performance_report.py │ │ ├── profiler.py │ │ ├── rules.py │ │ ├── runtime.py │ │ ├── single_assignment.py │ │ ├── size_assessment.py │ │ ├── sizer.py │ │ ├── special_function_caller.py │ │ ├── support.py │ │ ├── tensorizer_transformer.py │ │ └── typer_base.py │ ├── diagnostics │ │ ├── README.md │ │ ├── __init__.py │ │ ├── common_plots.py │ │ ├── common_statistics.py │ │ ├── diagnostics.py │ │ └── tools │ │ │ ├── __init__.py │ │ │ ├── js │ │ │ ├── .eslintrc.js │ │ │ ├── .prettierrc │ │ │ ├── package.json │ │ │ ├── src │ │ │ │ ├── marginal1d │ │ │ │ │ ├── callbacks.ts │ │ │ │ │ ├── index.ts │ │ │ │ │ └── interfaces.ts │ │ │ │ ├── stats │ │ │ │ │ ├── array.ts │ │ │ │ │ ├── dataTransformation.ts │ │ │ │ │ ├── highestDensityInterval.ts │ │ │ │ │ ├── histogram.ts │ │ │ │ │ ├── marginal.ts │ │ │ │ │ ├── pointStatistic.ts │ │ │ │ │ └── utils.ts │ │ │ │ ├── trace │ │ │ │ │ ├── callbacks.ts │ │ │ │ │ ├── index.ts │ │ │ │ │ └── interfaces.ts │ │ │ │ └── types │ │ │ │ │ └── fast-kde.d.ts │ │ │ ├── tsconfig.json │ │ │ ├── webpack.config.js │ │ │ └── yarn.lock │ │ │ ├── marginal1d │ │ │ ├── __init__.py │ │ │ ├── tool.py │ │ │ ├── typing.py │ │ │ └── utils.py │ │ │ ├── trace │ │ │ ├── __init__.py │ │ │ ├── tool.py │ │ │ ├── typing.py │ │ │ └── utils.py │ │ │ ├── utils │ │ │ ├── __init__.py │ │ │ ├── accessor.py │ │ │ ├── diagnostic_tool_base.py │ │ │ ├── model_serializers.py │ │ │ └── plotting_utils.py │ │ │ └── viz.py │ ├── distributions │ │ ├── __init__.py │ │ ├── delta.py │ │ ├── flat.py │ │ └── unit.py │ ├── examples │ │ ├── __init__.py │ │ └── conjugate_models │ │ │ ├── __init__.py │ │ │ ├── beta_bernoulli.py │ │ │ ├── beta_binomial.py │ │ │ ├── categorical_dirichlet.py │ │ │ ├── gamma_gamma.py │ │ │ ├── gamma_normal.py │ │ │ └── normal_normal.py │ ├── experimental │ │ ├── README.md │ │ ├── __init__.py │ │ ├── causal_inference │ │ │ ├── __init__.py │ │ │ └── models │ │ │ │ ├── __init__.py │ │ │ │ └── bart │ │ │ │ ├── __init__.py │ │ │ │ ├── bart_model.py │ │ │ │ ├── exceptions.py │ │ │ │ ├── grow_from_root_tree_proposer.py │ │ │ │ ├── grow_prune_tree_proposer.py │ │ │ │ ├── mutation.py │ │ │ │ ├── node.py │ │ │ │ ├── scalar_samplers.py │ │ │ │ ├── split_rule.py │ │ │ │ ├── tree.py │ │ │ │ └── tree_proposer.py │ │ ├── gp │ │ │ ├── __init__.py │ │ │ └── models.py │ │ └── torch_jit_backend.py │ ├── inference │ │ ├── __init__.py │ │ ├── base_inference.py │ │ ├── bmg_inference.py │ │ ├── compositional_infer.py │ │ ├── hmc_inference.py │ │ ├── monte_carlo_samples.py │ │ ├── nuts_inference.py │ │ ├── predictive.py │ │ ├── proposer │ │ │ ├── __init__.py │ │ │ ├── base_proposer.py │ │ │ ├── base_single_site_mh_proposer.py │ │ │ ├── hmc_proposer.py │ │ │ ├── hmc_utils.py │ │ │ ├── newtonian_monte_carlo_utils.py │ │ │ ├── nmc │ │ │ │ ├── __init__.py │ │ │ │ ├── single_site_half_space_nmc_proposer.py │ │ │ │ ├── single_site_real_space_nmc_proposer.py │ │ │ │ └── single_site_simplex_space_nmc_proposer.py │ │ │ ├── nnc │ │ │ │ ├── __init__.py │ │ │ │ └── utils.py │ │ │ ├── normal_eig.py │ │ │ ├── nuts_proposer.py │ │ │ ├── sequential_proposer.py │ │ │ ├── single_site_ancestral_proposer.py │ │ │ ├── single_site_random_walk_proposer.py │ │ │ ├── single_site_uniform_proposer.py │ │ │ └── utils.py │ │ ├── sampler.py │ │ ├── single_site_ancestral_mh.py │ │ ├── single_site_inference.py │ │ ├── single_site_nmc.py │ │ ├── single_site_random_walk.py │ │ ├── single_site_uniform_mh.py │ │ ├── utils.py │ │ └── vi │ │ │ ├── __init__.py │ │ │ ├── autoguide.py │ │ │ ├── discrepancy.py │ │ │ ├── gradient_estimator.py │ │ │ ├── variational_infer.py │ │ │ └── variational_world.py │ ├── model │ │ ├── __init__.py │ │ ├── rv_identifier.py │ │ ├── statistical_model.py │ │ └── utils.py │ ├── py.typed │ ├── testlib │ │ ├── __init__.py │ │ ├── abstract_conjugate.py │ │ └── hypothesis_testing.py │ ├── utils │ │ ├── __init__.py │ │ ├── a_or_an.py │ │ ├── dotbuilder.py │ │ ├── equivalence.py │ │ ├── graph.py │ │ ├── item_counter.py │ │ ├── memoize.py │ │ ├── multidictionary.py │ │ ├── set_of_tensors.py │ │ ├── tensorops.py │ │ ├── treeprinter.py │ │ └── unique_name.py │ └── world │ │ ├── __init__.py │ │ ├── base_world.py │ │ ├── initialize_fn.py │ │ ├── utils.py │ │ ├── variable.py │ │ └── world.py │ └── tutorials │ ├── __init__.py │ └── utils │ ├── __init__.py │ ├── baseball.py │ ├── etl.py │ ├── hearts.py │ ├── nba.py │ ├── plots.py │ └── radon.py ├── tests ├── graph │ ├── __init__.py │ ├── cavi_test.py │ ├── graph_test.py │ ├── nmc_test.py │ └── operator_test.py └── ppl │ ├── __init__.py │ ├── compiler │ ├── __init__.py │ ├── annotated_assignment_test.py │ ├── ast_tools_test.py │ ├── bernoulli_test.py │ ├── binary_vs_multiary_addition_perf_test.py │ ├── binary_vs_multiary_multiplication_perf_test.py │ ├── bm_graph_builder_test.py │ ├── bm_to_bmg_test.py │ ├── bma_test.py │ ├── bmg_arithmetic_test.py │ ├── bmg_bad_models_test.py │ ├── bmg_factor_test.py │ ├── bmg_infer_interface_test.py │ ├── bmg_nodes_test.py │ ├── bmg_query_test.py │ ├── bmg_types_test.py │ ├── bmt_model_test.py │ ├── boolean_comparisons_test.py │ ├── broadcast_test.py │ ├── broadcaster_test.py │ ├── bug_regression_test.py │ ├── categorical_test.py │ ├── cholesky_test.py │ ├── coin_flip_test.py │ ├── column_index_test.py │ ├── comparison_rewriting_test.py │ ├── cycle_detector_test.py │ ├── devectorizer_transformer_test.py │ ├── dirichlet_test.py │ ├── disable_transformations_test.py │ ├── distribution_half_normal_test.py │ ├── distribution_normal_test.py │ ├── distribution_poisson_test.py │ ├── error_report_test.py │ ├── fix_beta_bernoulli_alpha_rv_test.py │ ├── fix_beta_bernoulli_basic_test.py │ ├── fix_beta_bernoulli_const_added_test.py │ ├── fix_beta_bernoulli_ops_test.py │ ├── fix_beta_binomial_basic_test.py │ ├── fix_binomial_logit_test.py │ ├── fix_if_test.py │ ├── fix_logaddexp_test.py │ ├── fix_logsumexp_perf_test.py │ ├── fix_logsumexp_test.py │ ├── fix_matrix_scale_test.py │ ├── fix_matrix_type_test.py │ ├── fix_multiary_ops_test.py │ ├── fix_normal_normal_basic_test.py │ ├── fix_observe_true_test.py │ ├── fix_problems_test.py │ ├── fix_vectorized_models_test.py │ ├── gaussian_mixture_model_test.py │ ├── gen_bm_python_test.py │ ├── gen_builder_test.py │ ├── gen_mini_test.py │ ├── gep_test.py │ ├── gmm_1d_2comp_test.py │ ├── graph_accumulation_test.py │ ├── index_test.py │ ├── item_test.py │ ├── jit_test.py │ ├── lattice_typer_test.py │ ├── linear_regression_test.py │ ├── lkj_cholesky_test.py │ ├── log1mexp_test.py │ ├── log_prob_test.py │ ├── logistic_regression_test.py │ ├── lromm_test.py │ ├── lse_vector_test.py │ ├── matrix_multiplication_test.py │ ├── n-schools_test.py │ ├── neals_funnel_test.py │ ├── node_context_test.py │ ├── patterns_test.py │ ├── perf_report_test.py │ ├── profiler_test.py │ ├── query_type_zero_bug_test.py │ ├── rules_test.py │ ├── single_assignment_test.py │ ├── size_assessment_test.py │ ├── sizer_test.py │ ├── stochastic_control_flow_test.py │ ├── support_test.py │ ├── tensor_operations_test.py │ ├── tensorize_transformer_test.py │ ├── testlib │ │ ├── __init__.py │ │ ├── conjugate_models.py │ │ └── fix_beta_conjugacy_test.py │ ├── to_matrix_test.py │ ├── to_probability_test.py │ ├── transpose_test.py │ ├── tutorial_GMM_with_1_dimensions_and_4_components_test.py │ ├── tutorial_GMM_with_2_dimensions_and_4_components_test.py │ ├── tutorial_Neals_Funnel_test.py │ ├── tutorial_Robust_Linear_Regression_test.py │ └── typer_base_test.py │ ├── conftest.py │ ├── diagnostics │ ├── __init__.py │ └── diagnostics_test.py │ ├── experimental │ ├── __init__.py │ ├── bart │ │ ├── __init__.py │ │ ├── bart_model_test.py │ │ ├── bart_node_test.py │ │ ├── bart_scalar_sampler_test.py │ │ ├── bart_split_rule_test.py │ │ ├── bart_tree_proposer_test.py │ │ ├── bart_tree_test.py │ │ └── xbart_grow_from_root_proposer_test.py │ ├── gp │ │ ├── __init__.py │ │ ├── inference_test.py │ │ └── models_test.py │ └── torch_jit_backend_test.py │ ├── inference │ ├── __init__.py │ ├── compositional_infer_conjugate_test_nightly.py │ ├── compositional_infer_test.py │ ├── hypothesis_testing_nightly.py │ ├── inference_error_reporting_test.py │ ├── inference_integration_test_nightly.py │ ├── inference_test.py │ ├── monte_carlo_samples_test.py │ ├── nnc_test.py │ ├── predictive_test.py │ ├── proposer │ │ ├── __init__.py │ │ ├── hmc_proposer_test.py │ │ ├── hmc_utils_test.py │ │ ├── nmc │ │ │ ├── __init__.py │ │ │ ├── single_site_half_space_newtonian_monte_carlo_proposer_test.py │ │ │ ├── single_site_real_space_newtonian_monte_carlo_proposer_test.py │ │ │ └── single_site_simplex_newtonian_monte_carlo_proposer_test.py │ │ ├── normal_eig_test.py │ │ ├── nuts_proposer_test.py │ │ └── utils_test.py │ ├── sampler_test.py │ ├── single_site_ancestral_mh_conjugate_test_nightly.py │ ├── single_site_ancestral_mh_test.py │ ├── single_site_hamiltonian_monte_carlo_conjugate_test_nightly.py │ ├── single_site_newtonian_monte_carlo_conjugate_test_nightly.py │ ├── single_site_newtonian_monte_carlo_test.py │ ├── single_site_no_u_turn_conjugate_test_nightly.py │ ├── single_site_random_walk_adaptive_conjugate_test_nightly.py │ ├── single_site_random_walk_conjugate_test_nightly.py │ ├── single_site_random_walk_test.py │ ├── single_site_uniform_mh_conjugate_test_nightly.py │ ├── single_site_uniform_mh_test.py │ ├── utils_test.py │ ├── vi_gpu_test.py │ └── vi_test.py │ ├── model │ ├── __init__.py │ └── rv_identifier_test.py │ ├── smoke_test.py │ ├── testlib │ ├── __init__.py │ └── hypothesis_testing_test.py │ ├── utils │ ├── __init__.py │ ├── dotbuilder_test.py │ ├── equivalence_test.py │ ├── graph_test.py │ ├── item_counter_test.py │ ├── memoize_test.py │ ├── multidictionary_test.py │ ├── set_of_tensors_test.py │ ├── tensorops_test.py │ └── treeprinter_test.py │ └── world │ ├── __init__.py │ ├── initialize_fn_test.py │ ├── utils_test.py │ ├── variable_test.py │ └── world_test.py ├── tutorials ├── Automatic_differentiation_variational_inference.ipynb ├── Bayesian_Logistic_Regression.ipynb ├── Bayesian_NNs_with_ADVI.ipynb ├── Bayesian_Structural_Time_Series.ipynb ├── Coin_flipping.ipynb ├── GMM_with_2_dimensions_and_4_components.ipynb ├── Gaussian_Process_Gpytorch.ipynb ├── Hidden_Markov_model.ipynb ├── Hierarchical_modeling.ipynb ├── Hierarchical_regression.ipynb ├── Item_Response_Theory.ipynb ├── Linear_Regression.ipynb ├── MLE_and_MAP_point_estimation.ipynb ├── Neals_funnel.ipynb ├── Probabilistic_PCA.ipynb ├── Robust_Linear_Regression.ipynb ├── Sparse_Logistic_Regression.ipynb ├── VI_generalized_linear_mixed_model.ipynb ├── Zero_inflated_count_data.ipynb ├── assets │ └── baseball │ │ ├── complete-pooling-dag.svg │ │ ├── no-pooling-dag.svg │ │ └── partial-pooling-dag.svg ├── german.data-numeric └── readme.md └── website ├── .eslintrc.js ├── .gitignore ├── .prettierignore ├── .prettierrc ├── .stylelintrc.js ├── .yarnclean ├── Makefile ├── README.md ├── babel.config.js ├── blog └── 2019-05-29-hello-world.md ├── docusaurus.config.js ├── package.json ├── scripts └── convert_ipynb_to_mdx.py ├── sidebars.js ├── sphinx ├── .gitignore ├── conf.py └── index.rst ├── src ├── components │ ├── CellOutput.jsx │ ├── LinkButtons.jsx │ └── Plotting.jsx ├── css │ ├── bokeh.css │ └── custom.css └── pages │ ├── index.js │ └── styles.module.css ├── static ├── .nojekyll └── img │ ├── beanmachine.png │ ├── beanmachine.svg │ ├── block_inference_hmm.png │ ├── block_inference_hmm_update.png │ ├── favicon.ico │ ├── favicon.svg │ ├── logo.svg │ ├── mcmc_autocorr.png │ ├── mcmc_trace.png │ ├── oss_logo.png │ ├── posterior_rate_dynamic.png │ ├── posterior_rate_static.png │ ├── prior_exponential.png │ ├── prior_poisson.png │ ├── prior_poisson_intro.png │ ├── undraw_docusaurus_mountain.svg │ ├── undraw_docusaurus_react.svg │ └── undraw_docusaurus_tree.svg ├── tutorials.json └── yarn.lock /.dockerignore: -------------------------------------------------------------------------------- 1 | Dockerfile 2 | -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/beanmachine/HEAD/.gitattributes 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