├── .flake8 ├── .git-blame-ignore-revs ├── .github └── ISSUE_TEMPLATE │ └── bug.md ├── .gitignore ├── CODE_OF_CONDUCT.rst ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── environment.yml ├── esm ├── __init__.py ├── axial_attention.py ├── constants.py ├── data.py ├── esmfold │ └── v1 │ │ ├── __init__.py │ │ ├── categorical_mixture.py │ │ ├── esmfold.py │ │ ├── misc.py │ │ ├── pretrained.py │ │ ├── tri_self_attn_block.py │ │ └── trunk.py ├── inverse_folding │ ├── __init__.py │ ├── features.py │ ├── gvp_encoder.py │ ├── gvp_modules.py │ ├── gvp_transformer.py │ ├── gvp_transformer_encoder.py │ ├── gvp_utils.py │ ├── multichain_util.py │ ├── transformer_decoder.py │ ├── transformer_layer.py │ └── util.py ├── model │ ├── __init__.py │ ├── esm1.py │ ├── esm2.py │ └── msa_transformer.py ├── modules.py ├── multihead_attention.py ├── pretrained.py ├── rotary_embedding.py └── version.py ├── examples ├── README.md ├── contact_prediction.ipynb ├── data │ ├── 1a3a_1_A.a3m │ ├── 1xcr_1_A.a3m │ ├── 5ahw_1_A.a3m │ ├── P62593.fasta │ ├── UniRef50_E9K9Y4.a3m │ ├── UniRef50_UPI0003108055.a3m │ ├── UniRef50_UPI0003674933.a3m │ ├── few_proteins.fasta │ ├── hhblits_uniclust_2017_10_1a3a_1_A.a3m │ ├── hhblits_uniclust_2017_10_1xcr_1_A.a3m │ ├── hhblits_uniclust_2017_10_5ahw_1_A.a3m │ └── some_proteins.fasta ├── esm2_infer_fairscale_fsdp_cpu_offloading.py ├── esm_structural_dataset.ipynb ├── inverse_folding │ ├── README.md │ ├── data │ │ ├── 4uv3.cif │ │ ├── 4uv3.pdb │ │ ├── 5YH2.cif │ │ ├── 5YH2.pdb │ │ ├── 5YH2_mutated_seqs.fasta │ │ └── example.json │ ├── illustration.png │ ├── notebook.ipynb │ ├── notebook_multichain.ipynb │ ├── output │ │ ├── 5YH2_mutated_seqs_scores.csv │ │ └── sampled_sequences.fasta │ ├── sample_sequences.py │ └── score_log_likelihoods.py ├── lm-design │ ├── 2N2U.pdb │ ├── README.md │ ├── __init__.py │ ├── additional_requirements.txt │ ├── conf │ │ ├── __init__.py │ │ └── config.yaml │ ├── fixed_backbone.ipynb │ ├── free_generation.ipynb │ ├── lm_design.py │ ├── paper-data │ │ ├── README.md │ │ ├── artificial_sequence_purge_ids.txt │ │ ├── data.csv │ │ └── uniref90_jackhmmer_purge_ids.txt │ └── utils │ │ ├── __init__.py │ │ ├── constants.py │ │ ├── fixedbb.py │ │ ├── free_generation.py │ │ ├── linear_projection.py │ │ ├── lm.py │ │ ├── loss.py │ │ ├── masking.py │ │ ├── misc.py │ │ ├── ngram.py │ │ ├── ngram_stats │ │ ├── bigram_seg.p │ │ ├── monogram_seg.p │ │ ├── quadgram_seg.p │ │ └── trigram_seg.p │ │ ├── pdb_loader.py │ │ ├── sampling.py │ │ ├── scheduler.py │ │ ├── struct_models.py │ │ └── tensor.py ├── protein-programming-language │ ├── README.md │ ├── language │ │ ├── __init__.py │ │ ├── energy.py │ │ ├── folding_callbacks.py │ │ ├── optimize.py │ │ ├── program.py │ │ ├── sequence.py │ │ └── utilities.py │ ├── programs │ │ ├── __init__.py │ │ ├── fixed_backbone.py │ │ ├── free_hallucination.py │ │ ├── functional_site_scaffolding.py │ │ ├── secondary_structure.py │ │ ├── symmetric_binding.py │ │ ├── symmetric_monomer.py │ │ └── symmetric_two_level_multimer.py │ └── tutorial.ipynb ├── sup_variant_prediction.ipynb └── variant-prediction │ ├── README.md │ ├── __init__.py │ ├── data │ ├── BLAT_ECOLX_1_b0.5.a3m │ ├── BLAT_ECOLX_Ranganathan2015.csv │ ├── BLAT_ECOLX_Ranganathan2015_labeled.csv │ ├── BLAT_ECOLX_Ranganathan2015_labeled_masked.csv │ ├── aggregated_rho.csv │ ├── aggregated_rho_round3.csv │ └── rho_pp.csv │ ├── mutation_data.bib │ └── predict.py ├── hubconf.py ├── pyproject.toml ├── scripts ├── __init__.py ├── atlas │ ├── README.md │ ├── v0 │ │ ├── full │ │ │ ├── bins.txt │ │ │ ├── esm2_embeddings.txt │ │ │ ├── esm2_embeddings │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_0_.40.txt │ │ │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ │ │ ├── tm_.40_.50_plddt_.80_.90.txt │ │ │ │ ├── tm_.40_.50_plddt_.90_1.txt │ │ │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── tm_.50_.60_plddt_.80_.90.txt │ │ │ │ ├── tm_.50_.60_plddt_.90_1.txt │ │ │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── tm_.60_.70_plddt_.90_1.txt │ │ │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ │ │ ├── tm_.70_.80_plddt_.40_.50.txt │ │ │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ │ │ ├── tm_.80_.90_plddt_.50_.60.txt │ │ │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ │ │ ├── tm_0_.40_plddt_.80_.90.txt │ │ │ │ ├── tm_0_.40_plddt_.90_1.txt │ │ │ │ └── tm_0_.40_plddt_0_.40.txt │ │ │ ├── foldseekdb.txt │ │ │ ├── foldseekdb │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_0_.40.txt │ │ │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ │ │ ├── tm_.40_.50_plddt_.80_.90.txt │ │ │ │ ├── tm_.40_.50_plddt_.90_1.txt │ │ │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── tm_.50_.60_plddt_.80_.90.txt │ │ │ │ ├── tm_.50_.60_plddt_.90_1.txt │ │ │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── tm_.60_.70_plddt_.90_1.txt │ │ │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ │ │ ├── tm_.70_.80_plddt_.40_.50.txt │ │ │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ │ │ ├── tm_.80_.90_plddt_.50_.60.txt │ │ │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ │ │ ├── tm_0_.40_plddt_.80_.90.txt │ │ │ │ ├── tm_0_.40_plddt_.90_1.txt │ │ │ │ └── tm_0_.40_plddt_0_.40.txt │ │ │ ├── tarballs.txt │ │ │ └── tarballs │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── backfill_v0_tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── backfill_v0_tm_0_.40_plddt_0_.40.txt │ │ │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ │ │ ├── tm_.40_.50_plddt_.80_.90.txt │ │ │ │ ├── tm_.40_.50_plddt_.90_1.txt │ │ │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ │ │ ├── tm_.50_.60_plddt_.80_.90.txt │ │ │ │ ├── tm_.50_.60_plddt_.90_1.txt │ │ │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ │ │ ├── tm_.60_.70_plddt_.90_1.txt │ │ │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ │ │ ├── tm_.70_.80_plddt_.40_.50.txt │ │ │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ │ │ ├── tm_.80_.90_plddt_.50_.60.txt │ │ │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ │ │ ├── tm_0_.40_plddt_.80_.90.txt │ │ │ │ ├── tm_0_.40_plddt_.90_1.txt │ │ │ │ └── tm_0_.40_plddt_0_.40.txt │ │ └── highquality_clust30 │ │ │ ├── foldseekdb.txt │ │ │ └── tarballs.txt │ └── v2023_02 │ │ └── full │ │ ├── bins.txt │ │ ├── esm2_embeddings.txt │ │ ├── esm2_embeddings │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ ├── tm_.70_.80_plddt_.40_.50.txt │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ └── tm_0_.40_plddt_0_.40.txt │ │ ├── foldseekdb.txt │ │ ├── foldseekdb │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ ├── tm_.70_.80_plddt_.40_50.txt │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ └── tm_0_.40_plddt_0_.40.txt │ │ ├── tarballs.txt │ │ └── tarballs │ │ ├── tm_.40_.50_plddt_.40_.50.txt │ │ ├── tm_.40_.50_plddt_.50_.60.txt │ │ ├── tm_.40_.50_plddt_.60_.70.txt │ │ ├── tm_.40_.50_plddt_.70_.80.txt │ │ ├── tm_.40_.50_plddt_0_.40.txt │ │ ├── tm_.50_.60_plddt_.40_.50.txt │ │ ├── tm_.50_.60_plddt_.50_.60.txt │ │ ├── tm_.50_.60_plddt_.60_.70.txt │ │ ├── tm_.50_.60_plddt_.70_.80.txt │ │ ├── tm_.50_.60_plddt_0_.40.txt │ │ ├── tm_.60_.70_plddt_.40_.50.txt │ │ ├── tm_.60_.70_plddt_.50_.60.txt │ │ ├── tm_.60_.70_plddt_.60_.70.txt │ │ ├── tm_.60_.70_plddt_.70_.80.txt │ │ ├── tm_.60_.70_plddt_.80_.90.txt │ │ ├── tm_.60_.70_plddt_0_.40.txt │ │ ├── tm_.70_.80_plddt_.40_.50.txt │ │ ├── tm_.70_.80_plddt_.50_.60.txt │ │ ├── tm_.70_.80_plddt_.60_.70.txt │ │ ├── tm_.70_.80_plddt_.70_.80.txt │ │ ├── tm_.70_.80_plddt_.80_.90.txt │ │ ├── tm_.70_.80_plddt_.90_1.txt │ │ ├── tm_.70_.80_plddt_0_.40.txt │ │ ├── tm_.80_.90_plddt_.60_.70.txt │ │ ├── tm_.80_.90_plddt_.70_.80.txt │ │ ├── tm_.80_.90_plddt_.80_.90.txt │ │ ├── tm_.80_.90_plddt_.90_1.txt │ │ ├── tm_.90_1_plddt_.70_.80.txt │ │ ├── tm_.90_1_plddt_.80_.90.txt │ │ ├── tm_.90_1_plddt_.90_1.txt │ │ ├── tm_0_.40_plddt_.40_.50.txt │ │ ├── tm_0_.40_plddt_.50_.60.txt │ │ ├── tm_0_.40_plddt_.60_.70.txt │ │ ├── tm_0_.40_plddt_.70_.80.txt │ │ └── tm_0_.40_plddt_0_.40.txt ├── download_weights.sh ├── extract.py └── fold.py ├── setup.py └── tests ├── inverse_folding_test_example.json ├── test_alphabet.py ├── test_inverse_folding.py ├── test_load_all.py ├── test_notebooks.py └── test_readme.py /.flake8: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/.flake8 -------------------------------------------------------------------------------- /.git-blame-ignore-revs: -------------------------------------------------------------------------------- 1 | # Migrate code style to Black 2 | 8bc7e948cd9bf0b6d1f2113e221ef548ef663377 3 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/.github/ISSUE_TEMPLATE/bug.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/.gitignore -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/CODE_OF_CONDUCT.rst -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/README.md -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/environment.yml -------------------------------------------------------------------------------- /esm/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/__init__.py -------------------------------------------------------------------------------- /esm/axial_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/axial_attention.py -------------------------------------------------------------------------------- /esm/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/constants.py -------------------------------------------------------------------------------- /esm/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/data.py -------------------------------------------------------------------------------- /esm/esmfold/v1/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /esm/esmfold/v1/categorical_mixture.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/categorical_mixture.py -------------------------------------------------------------------------------- /esm/esmfold/v1/esmfold.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/esmfold.py -------------------------------------------------------------------------------- /esm/esmfold/v1/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/misc.py -------------------------------------------------------------------------------- /esm/esmfold/v1/pretrained.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/pretrained.py -------------------------------------------------------------------------------- /esm/esmfold/v1/tri_self_attn_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/tri_self_attn_block.py -------------------------------------------------------------------------------- /esm/esmfold/v1/trunk.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/esmfold/v1/trunk.py -------------------------------------------------------------------------------- /esm/inverse_folding/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/__init__.py -------------------------------------------------------------------------------- /esm/inverse_folding/features.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/features.py -------------------------------------------------------------------------------- /esm/inverse_folding/gvp_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/gvp_encoder.py -------------------------------------------------------------------------------- /esm/inverse_folding/gvp_modules.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/gvp_modules.py -------------------------------------------------------------------------------- /esm/inverse_folding/gvp_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/gvp_transformer.py -------------------------------------------------------------------------------- /esm/inverse_folding/gvp_transformer_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/gvp_transformer_encoder.py -------------------------------------------------------------------------------- /esm/inverse_folding/gvp_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/gvp_utils.py -------------------------------------------------------------------------------- /esm/inverse_folding/multichain_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/multichain_util.py -------------------------------------------------------------------------------- /esm/inverse_folding/transformer_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/transformer_decoder.py -------------------------------------------------------------------------------- /esm/inverse_folding/transformer_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/transformer_layer.py -------------------------------------------------------------------------------- /esm/inverse_folding/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/inverse_folding/util.py -------------------------------------------------------------------------------- /esm/model/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /esm/model/esm1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/model/esm1.py -------------------------------------------------------------------------------- /esm/model/esm2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/model/esm2.py -------------------------------------------------------------------------------- /esm/model/msa_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/model/msa_transformer.py -------------------------------------------------------------------------------- /esm/modules.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/modules.py -------------------------------------------------------------------------------- /esm/multihead_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/multihead_attention.py -------------------------------------------------------------------------------- /esm/pretrained.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/pretrained.py -------------------------------------------------------------------------------- /esm/rotary_embedding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/rotary_embedding.py -------------------------------------------------------------------------------- /esm/version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/esm/version.py -------------------------------------------------------------------------------- /examples/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/README.md -------------------------------------------------------------------------------- /examples/contact_prediction.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/contact_prediction.ipynb -------------------------------------------------------------------------------- /examples/data/1a3a_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/1a3a_1_A.a3m -------------------------------------------------------------------------------- /examples/data/1xcr_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/1xcr_1_A.a3m -------------------------------------------------------------------------------- /examples/data/5ahw_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/5ahw_1_A.a3m -------------------------------------------------------------------------------- /examples/data/P62593.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/P62593.fasta -------------------------------------------------------------------------------- /examples/data/UniRef50_E9K9Y4.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/UniRef50_E9K9Y4.a3m -------------------------------------------------------------------------------- /examples/data/UniRef50_UPI0003108055.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/UniRef50_UPI0003108055.a3m -------------------------------------------------------------------------------- /examples/data/UniRef50_UPI0003674933.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/UniRef50_UPI0003674933.a3m -------------------------------------------------------------------------------- /examples/data/few_proteins.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/few_proteins.fasta -------------------------------------------------------------------------------- /examples/data/hhblits_uniclust_2017_10_1a3a_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/hhblits_uniclust_2017_10_1a3a_1_A.a3m -------------------------------------------------------------------------------- /examples/data/hhblits_uniclust_2017_10_1xcr_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/hhblits_uniclust_2017_10_1xcr_1_A.a3m -------------------------------------------------------------------------------- /examples/data/hhblits_uniclust_2017_10_5ahw_1_A.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/hhblits_uniclust_2017_10_5ahw_1_A.a3m -------------------------------------------------------------------------------- /examples/data/some_proteins.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/data/some_proteins.fasta -------------------------------------------------------------------------------- /examples/esm2_infer_fairscale_fsdp_cpu_offloading.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/esm2_infer_fairscale_fsdp_cpu_offloading.py -------------------------------------------------------------------------------- /examples/esm_structural_dataset.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/esm_structural_dataset.ipynb -------------------------------------------------------------------------------- /examples/inverse_folding/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/README.md -------------------------------------------------------------------------------- /examples/inverse_folding/data/4uv3.cif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/4uv3.cif -------------------------------------------------------------------------------- /examples/inverse_folding/data/4uv3.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/4uv3.pdb -------------------------------------------------------------------------------- /examples/inverse_folding/data/5YH2.cif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/5YH2.cif -------------------------------------------------------------------------------- /examples/inverse_folding/data/5YH2.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/5YH2.pdb -------------------------------------------------------------------------------- /examples/inverse_folding/data/5YH2_mutated_seqs.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/5YH2_mutated_seqs.fasta -------------------------------------------------------------------------------- /examples/inverse_folding/data/example.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/data/example.json -------------------------------------------------------------------------------- /examples/inverse_folding/illustration.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/illustration.png -------------------------------------------------------------------------------- /examples/inverse_folding/notebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/notebook.ipynb -------------------------------------------------------------------------------- /examples/inverse_folding/notebook_multichain.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/notebook_multichain.ipynb -------------------------------------------------------------------------------- /examples/inverse_folding/output/5YH2_mutated_seqs_scores.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/output/5YH2_mutated_seqs_scores.csv -------------------------------------------------------------------------------- /examples/inverse_folding/output/sampled_sequences.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/output/sampled_sequences.fasta -------------------------------------------------------------------------------- /examples/inverse_folding/sample_sequences.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/sample_sequences.py -------------------------------------------------------------------------------- /examples/inverse_folding/score_log_likelihoods.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/inverse_folding/score_log_likelihoods.py -------------------------------------------------------------------------------- /examples/lm-design/2N2U.pdb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/2N2U.pdb -------------------------------------------------------------------------------- /examples/lm-design/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/README.md -------------------------------------------------------------------------------- /examples/lm-design/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/lm-design/additional_requirements.txt: -------------------------------------------------------------------------------- 1 | nltk 2 | py3Dmol 3 | hydra 4 | -------------------------------------------------------------------------------- /examples/lm-design/conf/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/lm-design/conf/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/conf/config.yaml -------------------------------------------------------------------------------- /examples/lm-design/fixed_backbone.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/fixed_backbone.ipynb -------------------------------------------------------------------------------- /examples/lm-design/free_generation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/free_generation.ipynb -------------------------------------------------------------------------------- /examples/lm-design/lm_design.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/lm_design.py -------------------------------------------------------------------------------- /examples/lm-design/paper-data/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/paper-data/README.md -------------------------------------------------------------------------------- /examples/lm-design/paper-data/artificial_sequence_purge_ids.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/paper-data/artificial_sequence_purge_ids.txt -------------------------------------------------------------------------------- /examples/lm-design/paper-data/data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/paper-data/data.csv -------------------------------------------------------------------------------- /examples/lm-design/paper-data/uniref90_jackhmmer_purge_ids.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/paper-data/uniref90_jackhmmer_purge_ids.txt -------------------------------------------------------------------------------- /examples/lm-design/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/lm-design/utils/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/constants.py -------------------------------------------------------------------------------- /examples/lm-design/utils/fixedbb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/fixedbb.py -------------------------------------------------------------------------------- /examples/lm-design/utils/free_generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/free_generation.py -------------------------------------------------------------------------------- /examples/lm-design/utils/linear_projection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/linear_projection.py -------------------------------------------------------------------------------- /examples/lm-design/utils/lm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/lm.py -------------------------------------------------------------------------------- /examples/lm-design/utils/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/loss.py -------------------------------------------------------------------------------- /examples/lm-design/utils/masking.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/masking.py -------------------------------------------------------------------------------- /examples/lm-design/utils/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/misc.py -------------------------------------------------------------------------------- /examples/lm-design/utils/ngram.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/ngram.py -------------------------------------------------------------------------------- /examples/lm-design/utils/ngram_stats/bigram_seg.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/ngram_stats/bigram_seg.p -------------------------------------------------------------------------------- /examples/lm-design/utils/ngram_stats/monogram_seg.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/ngram_stats/monogram_seg.p -------------------------------------------------------------------------------- /examples/lm-design/utils/ngram_stats/quadgram_seg.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/ngram_stats/quadgram_seg.p -------------------------------------------------------------------------------- /examples/lm-design/utils/ngram_stats/trigram_seg.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/ngram_stats/trigram_seg.p -------------------------------------------------------------------------------- /examples/lm-design/utils/pdb_loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/pdb_loader.py -------------------------------------------------------------------------------- /examples/lm-design/utils/sampling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/sampling.py -------------------------------------------------------------------------------- /examples/lm-design/utils/scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/scheduler.py -------------------------------------------------------------------------------- /examples/lm-design/utils/struct_models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/struct_models.py -------------------------------------------------------------------------------- /examples/lm-design/utils/tensor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/lm-design/utils/tensor.py -------------------------------------------------------------------------------- /examples/protein-programming-language/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/README.md -------------------------------------------------------------------------------- /examples/protein-programming-language/language/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/__init__.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/energy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/energy.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/folding_callbacks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/folding_callbacks.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/optimize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/optimize.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/program.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/program.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/sequence.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/sequence.py -------------------------------------------------------------------------------- /examples/protein-programming-language/language/utilities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/language/utilities.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/__init__.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/fixed_backbone.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/fixed_backbone.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/free_hallucination.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/free_hallucination.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/functional_site_scaffolding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/functional_site_scaffolding.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/secondary_structure.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/secondary_structure.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/symmetric_binding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/symmetric_binding.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/symmetric_monomer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/symmetric_monomer.py -------------------------------------------------------------------------------- /examples/protein-programming-language/programs/symmetric_two_level_multimer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/programs/symmetric_two_level_multimer.py -------------------------------------------------------------------------------- /examples/protein-programming-language/tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/protein-programming-language/tutorial.ipynb -------------------------------------------------------------------------------- /examples/sup_variant_prediction.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/sup_variant_prediction.ipynb -------------------------------------------------------------------------------- /examples/variant-prediction/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/README.md -------------------------------------------------------------------------------- /examples/variant-prediction/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/variant-prediction/data/BLAT_ECOLX_1_b0.5.a3m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/BLAT_ECOLX_1_b0.5.a3m -------------------------------------------------------------------------------- /examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015.csv -------------------------------------------------------------------------------- /examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015_labeled.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015_labeled.csv -------------------------------------------------------------------------------- /examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015_labeled_masked.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/BLAT_ECOLX_Ranganathan2015_labeled_masked.csv -------------------------------------------------------------------------------- /examples/variant-prediction/data/aggregated_rho.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/aggregated_rho.csv -------------------------------------------------------------------------------- /examples/variant-prediction/data/aggregated_rho_round3.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/aggregated_rho_round3.csv -------------------------------------------------------------------------------- /examples/variant-prediction/data/rho_pp.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/data/rho_pp.csv -------------------------------------------------------------------------------- /examples/variant-prediction/mutation_data.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/mutation_data.bib -------------------------------------------------------------------------------- /examples/variant-prediction/predict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/examples/variant-prediction/predict.py -------------------------------------------------------------------------------- /hubconf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/hubconf.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/pyproject.toml -------------------------------------------------------------------------------- /scripts/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /scripts/atlas/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/README.md -------------------------------------------------------------------------------- /scripts/atlas/v0/full/bins.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/bins.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/backfill_v0_tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/esm2_embeddings/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/backfill_v0_tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/foldseekdb/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/backfill_v0_tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/full/tarballs/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/highquality_clust30/foldseekdb.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/highquality_clust30/foldseekdb.txt -------------------------------------------------------------------------------- /scripts/atlas/v0/highquality_clust30/tarballs.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v0/highquality_clust30/tarballs.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/bins.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/bins.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/esm2_embeddings/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.40_50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.40_50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/foldseekdb/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.40_.50_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.50_.60_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.60_.70_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.70_.80_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.80_.90_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.80_.90.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.80_.90.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.90_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_.90_1_plddt_.90_1.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.40_.50.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.40_.50.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.50_.60.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.50_.60.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.60_.70.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.60_.70.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.70_.80.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_.70_.80.txt -------------------------------------------------------------------------------- /scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_0_.40.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/atlas/v2023_02/full/tarballs/tm_0_.40_plddt_0_.40.txt -------------------------------------------------------------------------------- /scripts/download_weights.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/download_weights.sh -------------------------------------------------------------------------------- /scripts/extract.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/extract.py -------------------------------------------------------------------------------- /scripts/fold.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/scripts/fold.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/setup.py -------------------------------------------------------------------------------- /tests/inverse_folding_test_example.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/inverse_folding_test_example.json -------------------------------------------------------------------------------- /tests/test_alphabet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/test_alphabet.py -------------------------------------------------------------------------------- /tests/test_inverse_folding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/test_inverse_folding.py -------------------------------------------------------------------------------- /tests/test_load_all.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/test_load_all.py -------------------------------------------------------------------------------- /tests/test_notebooks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/test_notebooks.py -------------------------------------------------------------------------------- /tests/test_readme.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/facebookresearch/esm/HEAD/tests/test_readme.py --------------------------------------------------------------------------------