├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── apsim_classic.R ├── apsim_internal.R ├── apsim_met.R ├── apsim_soils.R ├── apsim_version.R ├── apsimx.R ├── apsimx_filetype.R ├── apsimx_soil_profile.R ├── compare_apsim.R ├── compare_apsim_met.R ├── data-doc.R ├── edit_apsim.R ├── edit_apsim_replace_soil_profile.R ├── edit_apsim_xml.R ├── edit_apsimx_batch.R ├── edit_apsimx_json.R ├── edit_apsimx_replace_soil_profile.R ├── edit_apsimx_replacement.R ├── extract_data_apsimx.R ├── get_chirps_apsim_met.R ├── get_daymet_apsim_met.R ├── get_gsod_apsim_met.R ├── get_iemre_apsim_met.R ├── get_isric_soil_profile.R ├── get_power_apsim_met.R ├── get_slga_soil_profile.R ├── get_ssurgo_soil_profile.R ├── get_ssurgo_tables.R ├── get_worldmodeler_soil_profile.R ├── inspect_apsim_xml.R ├── inspect_apsimx_json.R ├── inspect_apsimx_replacement.R ├── optim_apsim.R ├── optim_apsimx.R ├── sens_apsim.R ├── sens_apsimx.R ├── ssurgo2sp.R ├── unit_conv.R ├── view_apsimx.R ├── wget_apsimx_json.R └── zzz.R ├── README.md ├── data ├── obsWheat.rda └── wheat-opt-ex.rda ├── doc ├── apsimx-scripts.R ├── apsimx-scripts.Rmd ├── apsimx-scripts.html ├── apsimx.R ├── apsimx.Rmd └── apsimx.html ├── inst └── extdata │ ├── Ames.met │ ├── Clarion.soils │ ├── Factorial.apsimx │ ├── ISUAG │ └── SSURGO │ │ ├── ISUAG_SSURGO_Mapunits.dbf │ │ ├── ISUAG_SSURGO_Mapunits.prj │ │ ├── ISUAG_SSURGO_Mapunits.shp │ │ ├── ISUAG_SSURGO_Mapunits.shx │ │ ├── ISUAG_SSURGO_chorizon.csv │ │ ├── ISUAG_SSURGO_component.csv │ │ └── ISUAG_SSURGO_mapunit.csv │ ├── Maize-op.apsim │ ├── Maize.apsimx │ ├── Maize.csv │ ├── Maize.out │ ├── Maize.sum │ ├── Maize75.xml │ ├── MaizeSoybean.apsimx │ ├── Millet.apsim │ ├── Millet.out │ ├── Millet.sum │ ├── Soybean.apsimx │ ├── Wheat-opt-ex.apsimx │ ├── Wheat.apsimx │ ├── Wheat.csv │ ├── WheatRye.apsimx │ ├── Wheat_soil.apsimx │ ├── maize-factorial.apsim │ ├── maize-manager-folder.apsimx │ ├── maize-manager.apsimx │ ├── maize-soybean-rotation.apsim │ ├── maize-swim.apsim │ ├── wheat-sim-b4-opt.csv │ └── wheat-sim-opt.csv ├── man ├── add_column_apsim_met.Rd ├── amp_apsim_met.Rd ├── apsim.Rd ├── apsim.options.Rd ├── apsim_example.Rd ├── apsim_options.Rd ├── apsim_version.Rd ├── apsimx.Rd ├── apsimx.options.Rd ├── apsimx_example.Rd ├── apsimx_filetype.Rd ├── apsimx_options.Rd ├── apsimx_soil_profile.Rd ├── as_apsim_met.Rd ├── auto_detect_apsim_examples.Rd ├── auto_detect_apsimx_examples.Rd ├── available_water_content.Rd ├── carbon_stocks.Rd ├── check_apsim_met.Rd ├── check_apsimx.Rd ├── compare_apsim.Rd ├── compare_apsim_met.Rd ├── compare_apsim_soil_profile.Rd ├── doy2date.Rd ├── edit_apsim.Rd ├── edit_apsim_replace_soil_profile.Rd ├── edit_apsim_xml.Rd ├── edit_apsimx.Rd ├── edit_apsimx_batch.Rd ├── edit_apsimx_replace_soil_profile.Rd ├── edit_apsimx_replacement.Rd ├── extract_data_apsimx.Rd ├── extract_values_apsimx.Rd ├── get_apsimx_json.Rd ├── get_chirps_apsim_met.Rd ├── get_daymet2_apsim_met.Rd ├── get_daymet_apsim_met.Rd ├── get_gsod_apsim_met.Rd ├── get_iem_apsim_met.Rd ├── get_iemre_apsim_met.Rd ├── get_isric_soil_profile.Rd ├── get_power_apsim_met.Rd ├── get_slga_soil.Rd ├── get_ssurgo_soil_profile.Rd ├── get_ssurgo_tables.Rd ├── get_worldmodeler_apsim_met.Rd ├── get_worldmodeler_soil_profile.Rd ├── grep_json_list.Rd ├── impute_apsim_met.Rd ├── initialwater_parms.Rd ├── insert_replacement_node.Rd ├── inspect_apsim.Rd ├── inspect_apsim_xml.Rd ├── inspect_apsimx.Rd ├── inspect_apsimx_json.Rd ├── inspect_apsimx_replacement.Rd ├── mcmc.apsim.env.Rd ├── mcmc.apsimx.env.Rd ├── napad_apsim_met.Rd ├── obsWheat.Rd ├── optim_apsim.Rd ├── optim_apsimx.Rd ├── plot.met.Rd ├── print.met.Rd ├── read_apsim.Rd ├── read_apsim_all.Rd ├── read_apsim_met.Rd ├── read_apsim_soils.Rd ├── read_apsimx.Rd ├── read_apsimx_all.Rd ├── sens_apsim.Rd ├── sens_apsimx.Rd ├── soilorganicmatter_parms.Rd ├── soilwat_parms.Rd ├── solutes_parms.Rd ├── ssurgo2sp.Rd ├── summary.met.Rd ├── swim_parms.Rd ├── tav_apsim_met.Rd ├── tt_apsim_met.Rd ├── unit_conv.Rd ├── view_apsim.Rd ├── view_apsim_xml.Rd ├── view_apsimx.Rd ├── wop.Rd ├── wop.h.Rd ├── write_apsim_met.Rd └── xargs_apsimx.Rd ├── tests ├── test_AK_point_sim.R ├── test_allow_path_spaces.R ├── test_apsim_met.R ├── test_apsim_met_tt.R ├── test_apsim_soils.R ├── test_apsim_swim.R ├── test_apsimx_factorial.R ├── test_check_apsimx.R ├── test_classic_examples.r ├── test_compare_apsim.R ├── test_cores_sens_apsimx.R ├── test_edit.R ├── test_edit_apsim_replace_soil_profile.R ├── test_edit_apsim_xml.R ├── test_edit_apsimx_json.R ├── test_edit_apsimx_replacement.R ├── test_edit_batch.R ├── test_examples.R ├── test_extract_data.R ├── test_extract_values_apsimx.R ├── test_get_daymet_apsim_met.R ├── test_get_gsod_apsim_met.R ├── test_get_isric_soil_profile.R ├── test_grep_json_list.R ├── test_initialwater.R ├── test_insert_replacement_node.R ├── test_inspect.R ├── test_inspect_apsim_factorial.R ├── test_inspect_apsim_xml.R ├── test_inspect_apsimx_json.R ├── test_optim_apsimx.R ├── 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