├── .gitattributes ├── README.md ├── classification ├── code │ ├── .ipynb_checkpoints │ │ └── .gitignore │ └── train_and_predict.ipynb ├── inputs │ ├── 2GFP_above_parent123457.pkl │ ├── GFP_data.pkl │ ├── X_and_terms.pkl │ ├── all_lit_chimeras_gaps.txt │ ├── gfp_props.pkl │ ├── lit_alignment_and_contacts.pkl │ └── props.pkl └── outputs │ ├── 2GFP_above_parent.pkl │ ├── 2GFP_above_parent.pkl.txt │ ├── matern52_bin0.1_max_peak_False.pkl │ └── matern52_bin0.1_max_peak_False.txt └── regression ├── .ipynb_checkpoints └── .gitignore ├── GP_matern_5_2_kernel.ipynb ├── GP_matern_5_2_kernel_LASSO.ipynb ├── GP_tools.py ├── __pycache__ └── .gitignore ├── chimera_tools.py ├── encoding_tools.py ├── inputs ├── Ephys_data_formatted.csv ├── alignment_and_contacts_C1C2.pkl ├── lit_alignment_and_contacts_pro2.pkl ├── shmetis_c_10_21_0 │ └── chimeras.output └── shmetis_n_10_21_0 │ └── chimeras.output ├── lasso_tools.py └── outputs ├── green_norm_matern_kernel.pdf ├── green_norm_matern_kernel_CV_fig1.pdf ├── green_norm_matern_kernel_LASSO_CV.pdf ├── kinetics_off_matern_kernel.pdf ├── kinetics_off_matern_kernel_CV_fig1.pdf ├── kinetics_off_matern_kernel_LASSO_CV.pdf ├── matern_green_norm_0.025_LASSO.csv ├── matern_kernel_gen10_green_norm.csv ├── matern_kernel_gen10_kinetics_off.csv ├── matern_kernel_gen10_max_peak.csv ├── matern_kinetics_off_0.03_LASSO.csv ├── matern_max_peak_0.05_LASSO.csv ├── max_peak_matern_kernel.pdf ├── max_peak_matern_kernel_CV_fig1.pdf └── max_peak_matern_kernel_LASSO_CV.pdf /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fhalab/channels/HEAD/.gitattributes -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fhalab/channels/HEAD/README.md -------------------------------------------------------------------------------- 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