├── LICENSE ├── README.md ├── __init__.py ├── comseg.png ├── dist ├── ComSeg-0.0.2-py3-none-any.whl ├── ComSeg-0.0.2.tar.gz ├── ComSeg-0.0.3-py3-none-any.whl └── ComSeg-0.0.3.tar.gz ├── docs ├── Makefile ├── build │ ├── doctrees │ │ ├── comseg.doctree │ │ ├── comseg │ │ │ ├── clustering.doctree │ │ │ ├── comSegdict.doctree │ │ │ ├── comseg.doctree │ │ │ ├── dataset.doctree │ │ │ └── index.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ ├── nbsphinx │ │ │ ├── userguide │ │ │ │ └── Quick_start.ipynb │ │ │ ├── userguide_Quick_start_15_1.png │ │ │ ├── userguide_Quick_start_16_1.png │ │ │ ├── userguide_Quick_start_19_0.png │ │ │ ├── userguide_Quick_start_19_1.png │ │ │ ├── userguide_Quick_start_20_0.png │ │ │ ├── userguide_Quick_start_20_1.png │ │ │ ├── userguide_Quick_start_26_0.png │ │ │ ├── userguide_Quick_start_27_0.png │ │ │ ├── userguide_Quick_start_30_1.png │ │ │ ├── userguide_Quick_start_31_1.png │ │ │ └── userguide_Quick_start_9_0.png │ │ ├── userguide.doctree │ │ └── userguide │ │ │ └── Quick_start.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _images │ │ ├── userguide_Quick_start_15_1.png │ │ ├── userguide_Quick_start_16_1.png │ │ ├── userguide_Quick_start_19_0.png │ │ ├── userguide_Quick_start_19_1.png │ │ ├── userguide_Quick_start_20_0.png │ │ ├── userguide_Quick_start_20_1.png │ │ ├── userguide_Quick_start_26_0.png │ │ ├── userguide_Quick_start_27_0.png │ │ ├── userguide_Quick_start_30_1.png │ │ ├── userguide_Quick_start_31_1.png │ │ └── userguide_Quick_start_9_0.png │ │ ├── _sources │ │ ├── comseg.rst.txt │ │ ├── comseg │ │ │ ├── clustering.rst.txt │ │ │ ├── comSegdict.rst.txt │ │ │ ├── comseg.rst.txt │ │ │ ├── dataset.rst.txt │ │ │ └── index.rst.txt │ │ ├── index.rst.txt │ │ ├── userguide.rst.txt │ │ └── userguide │ │ │ └── Quick_start.ipynb.txt │ │ ├── _static │ │ ├── alabaster.css │ │ ├── basic.css │ │ ├── classic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ ├── fonts │ │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ │ ├── fontawesome-webfont.eot │ │ │ │ ├── fontawesome-webfont.svg │ │ │ │ ├── fontawesome-webfont.ttf │ │ │ │ ├── fontawesome-webfont.woff │ │ │ │ ├── fontawesome-webfont.woff2 │ │ │ │ ├── lato-bold-italic.woff │ │ │ │ ├── lato-bold-italic.woff2 │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-normal-italic.woff │ │ │ │ ├── lato-normal-italic.woff2 │ │ │ │ ├── lato-normal.woff │ │ │ │ └── lato-normal.woff2 │ │ │ └── theme.css │ │ ├── custom.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── jquery-3.5.1.js │ │ ├── jquery.js │ │ ├── js │ │ │ ├── badge_only.js │ │ │ ├── html5shiv-printshiv.min.js │ │ │ ├── html5shiv.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── nbsphinx-broken-thumbnail.svg │ │ ├── nbsphinx-code-cells.css │ │ ├── nbsphinx-gallery.css │ │ ├── nbsphinx-no-thumbnail.svg │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── sidebar.js │ │ ├── underscore-1.13.1.js │ │ └── underscore.js │ │ ├── comseg.html │ │ ├── comseg │ │ ├── clustering.html │ │ ├── comSegdict.html │ │ ├── comseg.html │ │ ├── dataset.html │ │ └── index.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── userguide.html │ │ └── userguide │ │ ├── Quick_start.html │ │ └── Quick_start.ipynb ├── make.bat └── source │ ├── comseg.png │ ├── comseg.rst │ ├── comseg │ ├── clustering.rst │ ├── comSegdict.rst │ ├── comseg.rst │ └── dataset.rst │ ├── conf.py │ ├── index.rst │ ├── installation_guide.rst │ ├── installation_guide │ ├── index.rst │ └── install.rst │ ├── requirements.txt │ ├── userguide.rst │ └── userguide │ ├── .ipynb_checkpoints │ ├── Minimal_example-checkpoint.ipynb │ └── tutorial_0-checkpoint.ipynb │ ├── Minimal_example.ipynb │ ├── SOPA_COMSEG.ipynb │ ├── count_matrix.npy │ └── tutorial_0.ipynb ├── old_dist ├── ComSeg-0.0.7-py3-none-any.whl ├── comseg-0.0.7-py3-none-any.whl └── comseg-0.0.7.tar.gz ├── pyproject.toml ├── readthedocs.yml ├── requirements.txt ├── src ├── __init__.py ├── comseg.egg-info │ ├── PKG-INFO │ ├── SOURCES.txt │ ├── dependency_links.txt │ ├── requires.txt │ └── top_level.txt └── comseg │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-38.pyc │ ├── clustering.cpython-38.pyc │ ├── dataset.cpython-38.pyc │ ├── dictionary.cpython-38.pyc │ └── model.cpython-38.pyc │ ├── clustering.py │ ├── comseg.egg-info │ ├── PKG-INFO │ ├── SOURCES.txt │ ├── dependency_links.txt │ ├── requires.txt │ └── top_level.txt │ ├── dataset.py │ ├── dictionary.py │ ├── model.py │ └── utils │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-38.pyc │ ├── custom_louvain.cpython-38.pyc │ ├── plot.cpython-38.pyc │ ├── preprocessing.cpython-38.pyc │ └── utils_graph.cpython-38.pyc │ ├── custom_louvain.py │ ├── plot.py │ ├── preprocessing.py │ └── utils_graph.py └── test /LICENSE: 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